; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006872 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006872
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold10:38913680..38915293
RNA-Seq ExpressionSpg006872
SyntenySpg006872
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-4736.31Show/hide
Query:  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALS---------------------------------
        +NCL  LD TYIKVNV   D  RYRTRKGE+ TNVL VYDTKGDF++VL  WEGSA DS +LRDALS                                 
Subjt:  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALS---------------------------------

Query:  ---------------------------------------------------------------------------------------------KRTQSSE
                                                                                                     K T + E
Subjt:  ---------------------------------------------------------------------------------------------KRTQSSE

Query:  --------VHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGM
                V+AGGWRSDN TFR GYL QL  +M  K+ G ++   S I+SR++ +K+ +  + EM GP CS FGWNDE KCI AEKE FD W++P AKG+
Subjt:  --------VHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGM

Query:  RNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP
         NKSF H+++L+YVFGKDRA G  +E   ++GSN P
Subjt:  RNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP

KAA0045638.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-5141.7Show/hide
Query:  NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLR------------DALSKRTQSSEVHAGGWR--------
        NCL  LD TYIKVNV   D P +RTRKGEI TNVL V DTKGDF++VL  WEGSA DS +LR            +    + +    H   WR        
Subjt:  NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLR------------DALSKRTQSSEVHAGGWR--------

Query:  -----------------------SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW
                                DN+TFR GYLAQL  +M EKL G  V   + I+ R++TLK+ +Q I EM GP CS  GWNDE KCI  +KE FD W
Subjt:  -----------------------SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW

Query:  --NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT
          ++P AKG+ NKSF ++++LTYVFG++R I R +E   ++GSN P    D  D+   +E+ + + S     ++++QD+ R +
Subjt:  --NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT

KAA0052026.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-5052.38Show/hide
Query:  LDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSK-------RTQSSE---------------------VHAG
        LD  YIK+NV   D  RYRT KGE+ TNVL V DTKGDFI+VL  WEGSA DS +LRDA+S+       R  SS                      V+ G
Subjt:  LDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSK-------RTQSSE---------------------VHAG

Query:  GWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGMRNKSFPHFEDLT
        GWRSDN TF  GYL QL  +M  K+ G ++   S I+SR++ LK+ +  I EM GP CS FGWNDE KCI  EKE FD W++P AKG+ NKSFPH+++L+
Subjt:  GWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGMRNKSFPHFEDLT

Query:  YVFGKDRAIG
        YVFGKDRA G
Subjt:  YVFGKDRAIG

TYK02619.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-5141.7Show/hide
Query:  NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLR------------DALSKRTQSSEVHAGGWR--------
        NCL  LD TYIKVNV   D P +RTRKGEI TNVL V DTKGDF++VL  WEGSA DS +LR            +    + +    H   WR        
Subjt:  NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLR------------DALSKRTQSSEVHAGGWR--------

Query:  -----------------------SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW
                                DN+TFR GYLAQL  +M EKL G  V   + I+ R++TLK+ +Q I EM GP CS  GWNDE KCI  +KE FD W
Subjt:  -----------------------SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW

Query:  --NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT
          ++P AKG+ NKSF ++++LTYVFG++R I R +E   ++GSN P    D  D+   +E+ + + S     ++++QD+ R +
Subjt:  --NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT

TYK04867.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-5048.48Show/hide
Query:  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSKRT-----QSSEVHA------------------
        +NC   LDETYIKVNV   D P + T KGEI TNVL V DTKGDF++VL  WEGS VDS +LRDAL++         S  H+                  
Subjt:  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSKRT-----QSSEVHA------------------

Query:  --------------------GGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDL
                            GGW+SDN TFR GYLAQL  +M EKL G  V   + I+ R++ LK+ +QVI EM GP CS FGWNDE KCI AEKE FD 
Subjt:  --------------------GGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDL

Query:  W--NYPIAKGMRNKSFPHFEDLTYVFGKDRA
        W  ++P AKG+ NKSF ++++LTYVFG+D+A
Subjt:  W--NYPIAKGMRNKSFPHFEDLTYVFGKDRA

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein9.2e-4836.31Show/hide
Query:  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALS---------------------------------
        +NCL  LD TYIKVNV   D  RYRTRKGE+ TNVL VYDTKGDF++VL  WEGSA DS +LRDALS                                 
Subjt:  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALS---------------------------------

Query:  ---------------------------------------------------------------------------------------------KRTQSSE
                                                                                                     K T + E
Subjt:  ---------------------------------------------------------------------------------------------KRTQSSE

Query:  --------VHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGM
                V+AGGWRSDN TFR GYL QL  +M  K+ G ++   S I+SR++ +K+ +  + EM GP CS FGWNDE KCI AEKE FD W++P AKG+
Subjt:  --------VHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGM

Query:  RNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP
         NKSF H+++L+YVFGKDRA G  +E   ++GSN P
Subjt:  RNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP

A0A5A7TS15 Retrotransposon protein3.0e-5141.7Show/hide
Query:  NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLR------------DALSKRTQSSEVHAGGWR--------
        NCL  LD TYIKVNV   D P +RTRKGEI TNVL V DTKGDF++VL  WEGSA DS +LR            +    + +    H   WR        
Subjt:  NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLR------------DALSKRTQSSEVHAGGWR--------

Query:  -----------------------SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW
                                DN+TFR GYLAQL  +M EKL G  V   + I+ R++TLK+ +Q I EM GP CS  GWNDE KCI  +KE FD W
Subjt:  -----------------------SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW

Query:  --NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT
          ++P AKG+ NKSF ++++LTYVFG++R I R +E   ++GSN P    D  D+   +E+ + + S     ++++QD+ R +
Subjt:  --NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT

A0A5A7UCU1 Retrotransposon protein1.5e-5052.38Show/hide
Query:  LDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSK-------RTQSSE---------------------VHAG
        LD  YIK+NV   D  RYRT KGE+ TNVL V DTKGDFI+VL  WEGSA DS +LRDA+S+       R  SS                      V+ G
Subjt:  LDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSK-------RTQSSE---------------------VHAG

Query:  GWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGMRNKSFPHFEDLT
        GWRSDN TF  GYL QL  +M  K+ G ++   S I+SR++ LK+ +  I EM GP CS FGWNDE KCI  EKE FD W++P AKG+ NKSFPH+++L+
Subjt:  GWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGMRNKSFPHFEDLT

Query:  YVFGKDRAIG
        YVFGKDRA G
Subjt:  YVFGKDRAIG

A0A5D3BWV2 Retrotransposon protein3.0e-5141.7Show/hide
Query:  NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLR------------DALSKRTQSSEVHAGGWR--------
        NCL  LD TYIKVNV   D P +RTRKGEI TNVL V DTKGDF++VL  WEGSA DS +LR            +    + +    H   WR        
Subjt:  NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLR------------DALSKRTQSSEVHAGGWR--------

Query:  -----------------------SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW
                                DN+TFR GYLAQL  +M EKL G  V   + I+ R++TLK+ +Q I EM GP CS  GWNDE KCI  +KE FD W
Subjt:  -----------------------SDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLW

Query:  --NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT
          ++P AKG+ NKSF ++++LTYVFG++R I R +E   ++GSN P    D  D+   +E+ + + S     ++++QD+ R +
Subjt:  --NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP---KDEVDLNGSSENDILILSFTMPIVNMTQDEPRGT

A0A5D3DJT6 Retrotransposon protein1.2e-4738.69Show/hide
Query:  NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSK----------------------------RTQSS
        NCL  LD TYI VNVS  D P +RT K EI TNVL + + KGDF++VL  W+GSAVDS +LRDAL++                            R Q  
Subjt:  NCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSK----------------------------RTQSS

Query:  EVHA-------------------------------------------GGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVE
          +                                            GGW+SDN TFR GYLAQL  +M EKL G  V   + I+ R++TLK+ +Q I E
Subjt:  EVHA-------------------------------------------GGWRSDNETFRSGYLAQLEHLMKEKLFGWDVPVQSNIESRVRTLKKQYQVIVE

Query:  MTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP--KDEVDLNGSSENDILILSFTMPIV
        M GP CS FGWNDE KCI AEKE F+ W  +YP  KG+ NK F ++ + TYVFG DRA GR +E+  ++GSN P   +  D+   +E    ++    P  
Subjt:  MTGPGCSDFGWNDEFKCIEAEKETFDLW--NYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVP--KDEVDLNGSSENDILILSFTMPIV

Query:  NMTQD
        ++  D
Subjt:  NMTQD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein6.1e-0425.23Show/hide
Query:  VQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWN-----YPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVPKD
        V  N    +R L    + ++E  G     F W+     + A+    D+WN     +P A+  R K+ P + +L ++FGK+ + GR +  + +     P +
Subjt:  VQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWN-----YPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVPKD

Query:  EVDLNGSSEND
         V +N S   D
Subjt:  EVDLNGSSEND

AT5G28950.1 unknown protein7.5e-1041.43Show/hide
Query:  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSKRT
        ++C+  +D+T+I   VS    P +R RKG+I  N+L   +   +F++VL  WEGSA DS VL DAL++ +
Subjt:  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSKRT

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.5e-0536.62Show/hide
Query:  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSKRTQ
        ++C+ V+D  +I V V V +   +R   G +  NVL        F +VL  WEGSA D  VL  AL++R +
Subjt:  QNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSKRTQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGACGCAAAATTGCCTCGATGTGTTAGATGAAACATACATCAAGGTCAATGTTAGTGTCTTCGATTGCCCGAGGTATAGAACAAGGAAAGGTGAAATTGTAACGAA
TGTGCTTGTTGTCTATGATACAAAAGGAGATTTCATATTCGTCCTACCCGAGTGGGAAGGGTCTGCCGTTGATTCCTCAGTTCTTAGAGATGCATTATCAAAACGGACTC
AGAGTTCCGAAGTTCATGCTGGCGGTTGGAGGTCTGATAATGAGACTTTCAGATCTGGGTATCTGGCGCAACTGGAGCATTTGATGAAGGAGAAACTGTTTGGATGGGAT
GTTCCGGTACAAAGCAACATTGAATCCAGGGTTCGCACTTTGAAGAAACAATACCAAGTCATTGTAGAAATGACGGGTCCTGGATGCAGCGACTTTGGGTGGAACGATGA
ATTTAAGTGTATCGAGGCAGAAAAAGAAACGTTTGATTTGTGGAACTATCCTATCGCAAAAGGCATGCGAAATAAGTCTTTCCCGCACTTCGAGGACTTGACCTATGTTT
TTGGGAAGGATCGAGCCATAGGGAGGGTGTCAGAGGTGATGGGGGAGATGGGCTCCAATGTGCCAAAAGATGAGGTAGACCTCAATGGATCCTCAGAGAATGACATCCTG
ATCCTATCGTTCACCATGCCTATTGTGAACATGACACAGGATGAGCCTCGGGGGACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGACGCAAAATTGCCTCGATGTGTTAGATGAAACATACATCAAGGTCAATGTTAGTGTCTTCGATTGCCCGAGGTATAGAACAAGGAAAGGTGAAATTGTAACGAA
TGTGCTTGTTGTCTATGATACAAAAGGAGATTTCATATTCGTCCTACCCGAGTGGGAAGGGTCTGCCGTTGATTCCTCAGTTCTTAGAGATGCATTATCAAAACGGACTC
AGAGTTCCGAAGTTCATGCTGGCGGTTGGAGGTCTGATAATGAGACTTTCAGATCTGGGTATCTGGCGCAACTGGAGCATTTGATGAAGGAGAAACTGTTTGGATGGGAT
GTTCCGGTACAAAGCAACATTGAATCCAGGGTTCGCACTTTGAAGAAACAATACCAAGTCATTGTAGAAATGACGGGTCCTGGATGCAGCGACTTTGGGTGGAACGATGA
ATTTAAGTGTATCGAGGCAGAAAAAGAAACGTTTGATTTGTGGAACTATCCTATCGCAAAAGGCATGCGAAATAAGTCTTTCCCGCACTTCGAGGACTTGACCTATGTTT
TTGGGAAGGATCGAGCCATAGGGAGGGTGTCAGAGGTGATGGGGGAGATGGGCTCCAATGTGCCAAAAGATGAGGTAGACCTCAATGGATCCTCAGAGAATGACATCCTG
ATCCTATCGTTCACCATGCCTATTGTGAACATGACACAGGATGAGCCTCGGGGGACGTAA
Protein sequenceShow/hide protein sequence
MLTQNCLDVLDETYIKVNVSVFDCPRYRTRKGEIVTNVLVVYDTKGDFIFVLPEWEGSAVDSSVLRDALSKRTQSSEVHAGGWRSDNETFRSGYLAQLEHLMKEKLFGWD
VPVQSNIESRVRTLKKQYQVIVEMTGPGCSDFGWNDEFKCIEAEKETFDLWNYPIAKGMRNKSFPHFEDLTYVFGKDRAIGRVSEVMGEMGSNVPKDEVDLNGSSENDIL
ILSFTMPIVNMTQDEPRGT