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Spg006898 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006898
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionEncodes a protein whose expression is responsive to nematode infection.
Genome locationscaffold10:38119595..38119897
RNA-Seq ExpressionSpg006898
SyntenySpg006898
Gene Ontology termsNA
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KMT08003.1 hypothetical protein BVRB_6g144810 [Beta vulgaris subsp. vulgaris]3.5e-1147.42Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN
        M I GET  FKTPIQA  ++K++P H++ ES+ VK  GI+A+PLD  HNL P  LYFLVE+P    D+     R   S     A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN

XP_010681969.1 PREDICTED: uncharacterized protein At1g66480 [Beta vulgaris subsp. vulgaris]3.5e-1147.42Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN
        M I GET  FKTPIQA  ++K++P H++ ES+ VK  GI+A+PLD  HNL P  LYFLVE+P    D+     R   S     A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN

XP_021727304.1 uncharacterized protein At1g66480-like [Chenopodium quinoa]1.3e-1046.39Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN
        M I GET  FKTPIQA  ++K++P H++ +S+ VK  GI A+PLD  HNL P  LYFLVE+P    D+     R   S     A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN

XP_021744977.1 uncharacterized protein At1g66480-like [Chenopodium quinoa]1.3e-1046.39Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN
        M I GET  FKTPIQA  ++K++P H++ +S+ VK  GI A+PLD  HNL P  LYFLVE+P    D+     R   S     A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN

XP_028115913.1 uncharacterized protein At1g66480 [Camellia sinensis]1.7e-1049.47Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFK-RVFESAAISIAAA-RLERLKQRRRN
        M I GET  FKTP+QA  +LK+HP H+L ESE VK  GI A+PL+    L P  LYFLVE+P+     K R   S  I+++A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFK-RVFESAAISIAAA-RLERLKQRRRN

TrEMBL top hitse value%identityAlignment
A0A0K9QAI1 Uncharacterized protein1.9e-1046.39Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN
        M I GET  FKTPIQA +++K +P H++ ES+ VK  GI A+PLD  +NL P  LYFLVE+P    D+     R   S     A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN

A0A1J7HNJ0 Uncharacterized protein1.1e-1047.31Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFKRVFESAAISIAAARLERLKQRRRN
        M I GET   KTP++A  +LKNHP  +L ESE VK  GI A+PL+   +L P  LYFLVE+P  C    R   S     A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFKRVFESAAISIAAARLERLKQRRRN

A0A4S4D9W7 Uncharacterized protein8.3e-1149.47Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFK-RVFESAAISIAAA-RLERLKQRRRN
        M I GET  FKTP+QA  +LK+HP H+L ESE VK  GI A+PL+    L P  LYFLVE+P+     K R   S  I+++A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFK-RVFESAAISIAAA-RLERLKQRRRN

A0A6A5NS50 Uncharacterized protein1.4e-1047.31Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFKRVFESAAISIAAARLERLKQRRRN
        M I GET   KTP++A  +LKNHP  +L ESE VK  GI A+PL+   +L P  LYFLVE+P  C    R   S     A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFKRVFESAAISIAAARLERLKQRRRN

A0A803LJQ7 Uncharacterized protein6.4e-1146.39Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN
        M I GET  FKTPIQA  ++K++P H++ +S+ VK  GI A+PLD  HNL P  LYFLVE+P    D+     R   S     A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP----DNCCHFKRVFESAAISIAAARLERLKQRRRN

SwissProt top hitse value%identityAlignment
Q6NLC8 Uncharacterized protein At1g664803.2e-0733.01Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP-----------DNCCHFKRVFESAAISIAAARLERLKQ
        M I GET   KTP+ A  +  ++P ++L +S+ VK  G+ ++PL+    L P   YFLVE+P           +N   ++RV     +  A  RL+ L  
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP-----------DNCCHFKRVFESAAISIAAARLERLKQ

Query:  RRR
         RR
Subjt:  RRR

Arabidopsis top hitse value%identityAlignment
AT1G66480.1 plastid movement impaired 22.2e-0833.01Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP-----------DNCCHFKRVFESAAISIAAARLERLKQ
        M I GET   KTP+ A  +  ++P ++L +S+ VK  G+ ++PL+    L P   YFLVE+P           +N   ++RV     +  A  RL+ L  
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIP-----------DNCCHFKRVFESAAISIAAARLERLKQ

Query:  RRR
         RR
Subjt:  RRR

AT1G71015.1 unknown protein2.6e-1243.62Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCC-HFKRVFESAAISIAAARLERLKQRRRN
        MNI GE+   KTP++A  ++K+ P H+L ESE VK LGI A+PL+   NL    +YF+VE+P        R   S     A  RLE LK  RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCC-HFKRVFESAAISIAAARLERLKQRRRN

AT2G01340.1 Encodes a protein whose expression is responsive to nematode infection.3.1e-1043.01Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFKRVFESAAISIAAARLERLKQRRRN
        M I GET   KTP+ A  +LK+ P H+L +SE VK  G  A+PL+ +  L    LYF+VE P   C  +RV     +S A  RLE L   RR+
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFKRVFESAAISIAAARLERLKQRRRN

AT5G37840.1 BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1)1.0e-0837.5Show/hide
Query:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPD----NCCHFKRVFESAAISIAAARLERLKQRRR
        M I G+    KTP+ A +  K +P  +L +SE VK LG+ A+PL+    L P+  YFLV++P     N   ++RV        A  RLE L   RR
Subjt:  MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPD----NCCHFKRVFESAAISIAAARLERLKQRRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATAACAGGAGAAACCCAAATCTTCAAAACCCCAATTCAAGCTCTGAACATTCTCAAAAACCATCCTCGCCATCTTTTGTTCGAATCCGAGCAAGTTAAGCTTTT
AGGAATCGAAGCTCAGCCATTGGATTTGCAGCACAATCTGTTCCCGGACACTCTCTATTTTCTGGTGGAGATTCCTGATAACTGCTGTCATTTCAAAAGAGTTTTCGAGT
CGGCCGCTATCAGCATCGCGGCGGCCCGGCTGGAGCGGCTGAAGCAGCGGCGGAGGAATAGGGTTTGGAAGATAGGGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATATAACAGGAGAAACCCAAATCTTCAAAACCCCAATTCAAGCTCTGAACATTCTCAAAAACCATCCTCGCCATCTTTTGTTCGAATCCGAGCAAGTTAAGCTTTT
AGGAATCGAAGCTCAGCCATTGGATTTGCAGCACAATCTGTTCCCGGACACTCTCTATTTTCTGGTGGAGATTCCTGATAACTGCTGTCATTTCAAAAGAGTTTTCGAGT
CGGCCGCTATCAGCATCGCGGCGGCCCGGCTGGAGCGGCTGAAGCAGCGGCGGAGGAATAGGGTTTGGAAGATAGGGTTTTGA
Protein sequenceShow/hide protein sequence
MNITGETQIFKTPIQALNILKNHPRHLLFESEQVKLLGIEAQPLDLQHNLFPDTLYFLVEIPDNCCHFKRVFESAAISIAAARLERLKQRRRNRVWKIGF