; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006916 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006916
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold10:39045947..39046831
RNA-Seq ExpressionSpg006916
SyntenySpg006916
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.0e-1536.17Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV
        W PP   SWK+NT+A+W      GG+GWI RD  G +I A  + ++ + +I  LE++A+ E L+ + +   RP   I +ESD  + + +L+R   D +E+
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV

Query:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACD
            EE+ +++K    VS   I R +N VAH +AR A   D
Subjt:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACD

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]3.9e-1133.77Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV
        W+PP    WK+N DA+W++    GG+GWI RDS G  I A           +CL+ L+ + +L+  +        KI +ESD  +VV I+N+ S   +EV
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV

Query:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDS---PSKSSCFLG
        +L  E++ + ++      F  +P  +N VAH IAR A        P  + CF+G
Subjt:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDS---PSKSSCFLG

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.9e-1431.28Show/hide
Query:  ETLLSQRLWSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLE-NVNRPFPKIIVESDFADVVAILN
        +TL ++  W PPP   W +N DASW +   RGG+GWI R   G ++ AG + ++   ++K LE  A+ E L+ L    V RP   + +E+D A+V ++LN
Subjt:  ETLLSQRLWSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLE-NVNRPFPKIIVESDFADVVAILN

Query:  RISADCSEVALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDSPSKSSCFLGSSISEDEQISLGPLPSWLS
        R   D ++     EE+  L      ++F+ + R +N  AH +A+ A               S+  +  I +   P+WLS
Subjt:  RISADCSEVALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDSPSKSSCFLGSSISEDEQISLGPLPSWLS

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.6e-1534.93Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPK-----IIVESDFADVVAILNRISA
        W PP   SWK+NTDA+W      GG+GWI RD  G +I A  + ++ + +I  LE++A+ E L+ + +   RP  +     I +ESD  + + +L+R   
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPK-----IIVESDFADVVAILNRISA

Query:  DCSEVALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACD
        D +E+    EE+ ++++    VS   I R +N VAH +AR A   D
Subjt:  DCSEVALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACD

XP_028948889.1 uncharacterized protein LOC114821140 [Malus domestica]4.6e-1233.58Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV
        W+ P     K+NTDA+W     R GVGW+ RD  G L FAG        S   +E  A+  +L   ++N    F K+I++SD   ++ +L+++S     +
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV

Query:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSA
             +++ LV+   +V+FS +PR SNL AH +A+ A
Subjt:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134129.7e-1636.17Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV
        W PP   SWK+NT+A+W      GG+GWI RD  G +I A  + ++ + +I  LE++A+ E L+ + +   RP   I +ESD  + + +L+R   D +E+
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV

Query:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACD
            EE+ +++K    VS   I R +N VAH +AR A   D
Subjt:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACD

A0A6J1D4B6 uncharacterized protein LOC1110171811.9e-1133.77Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV
        W+PP    WK+N DA+W++    GG+GWI RDS G  I A           +CL+ L+ + +L+  +        KI +ESD  +VV I+N+ S   +EV
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV

Query:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDS---PSKSSCFLG
        +L  E++ + ++      F  +P  +N VAH IAR A        P  + CF+G
Subjt:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDS---PSKSSCFLG

A0A6J1DNV9 uncharacterized protein LOC1110224031.4e-1431.28Show/hide
Query:  ETLLSQRLWSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLE-NVNRPFPKIIVESDFADVVAILN
        +TL ++  W PPP   W +N DASW +   RGG+GWI R   G ++ AG + ++   ++K LE  A+ E L+ L    V RP   + +E+D A+V ++LN
Subjt:  ETLLSQRLWSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLE-NVNRPFPKIIVESDFADVVAILN

Query:  RISADCSEVALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDSPSKSSCFLGSSISEDEQISLGPLPSWLS
        R   D ++     EE+  L      ++F+ + R +N  AH +A+ A               S+  +  I +   P+WLS
Subjt:  RISADCSEVALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDSPSKSSCFLGSSISEDEQISLGPLPSWLS

A0A6J1DSV1 uncharacterized protein LOC1110236081.3e-1534.93Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPK-----IIVESDFADVVAILNRISA
        W PP   SWK+NTDA+W      GG+GWI RD  G +I A  + ++ + +I  LE++A+ E L+ + +   RP  +     I +ESD  + + +L+R   
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPK-----IIVESDFADVVAILNRISA

Query:  DCSEVALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACD
        D +E+    EE+ ++++    VS   I R +N VAH +AR A   D
Subjt:  DCSEVALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACD

A0A6J5WPU6 Reverse transcriptase domain-containing protein1.4e-0935.07Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV
        W  PP    K+N DA+W  +   GGVGW+ RDS G L+ AG +      S   +E+LA+  +L    E  N     IIVESD    + +LN  +   S++
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV

Query:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIA
             ++++LV     VSF   PR  N  AH +A
Subjt:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.5e-1131.82Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNR-PFPKIIVESDFADVVAILNRISADCSE
        W  PP    K NTDA+W  +  R G+GWI R+  G +++ G + L R  ++    + A  E+L+  +  ++R  + +II ESD   +V +LN  S D   
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNR-PFPKIIVESDFADVVAILNRISADCSE

Query:  VALFA-EEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDSPSKSSCFLGSSISEDEQISLGPLPSWLSSSLI
            A E++Q+L+     V F   PRG N VA  IAR +               S S  +      +P WL S+LI
Subjt:  VALFA-EEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDSPSKSSCFLGSSISEDEQISLGPLPSWLSSSLI

AT4G29090.1 Ribonuclease H-like superfamily protein1.3e-0927.59Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNR-PFPKIIVESDFADVVAILNRISADCSE
        W PPP    K NTDA+W     R G+GW+ R+  G + + G + L +  S+    + A  E+++  + +++R  +  +I ESD   ++ ILN        
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNR-PFPKIIVESDFADVVAILNRISADCSE

Query:  VALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDSPSKSSCFLGSSISEDEQISLGPLPSWLSSSL
        +    +++QRL+     V F  IPR  N +A  +AR +              S ++ D ++    +PSW  SS+
Subjt:  VALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDSPSKSSCFLGSSISEDEQISLGPLPSWLSSSL

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.0e-0625.55Show/hide
Query:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV
        WSPP     K N DAS  E+    G+GWI R+S G++I  G    + + + +  E   +  +++    +      K+I E D   +  ++N  S++   +
Subjt:  WSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAGFKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEV

Query:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSA
          F + +Q  +    ++ FS   R  N  A ++A+ A
Subjt:  ALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGACCTGTAGCTTCGGTAAGGCTGTGTGGTGCCACTTCTTCCCCATCCTGCGCAGCAACATCAAAATCAATTTAGGCAGTCCTGATTTCTCAAAGACAATCAGAGA
AGTCATGAGCAAGGACAGAGATGAAGTTTACCTCAGGGCCTGTGGGAAGATTGTTCCGACAGTGATCAGATCAGAGACCCTCTTGAGTCAAAGGCTCTGGTCCCCCCCTC
CTTGCTGTTCGTGGAAGATCAACACAGACGCTTCGTGGCTGGAAAAGGAAAGGCGTGGTGGGGTTGGATGGATCGCTCGTGACTCCTTAGGTTCTCTCATCTTTGCTGGT
TTCAAGCCGCTGAAGCGGAAATGGTCTATCAAGTGTCTGGAGATGCTGGCCGTGGCTGAGAGTCTTAAGTGCCTGCTTGAAAATGTCAACAGGCCTTTTCCAAAAATCAT
TGTTGAATCGGATTTCGCAGATGTTGTCGCCATCCTCAATCGGATTTCGGCTGATTGTTCGGAGGTTGCTCTGTTTGCGGAGGAAGTGCAGCGTTTGGTCAAGCTTTCGG
GTGCGGTTTCTTTCTCCTCTATTCCGAGGGGTTCAAATCTTGTAGCGCACTATATTGCGCGTTCTGCAACTGCTTGTGATTCTCCAAGCAAATCTAGTTGTTTTTTGGGT
TCTTCCATATCAGAAGACGAACAGATTTCTTTGGGCCCTTTGCCTAGTTGGCTATCATCCTCCTTAATTAAGGAGTTTTCTGTTGGTGTTGGTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGACCTGTAGCTTCGGTAAGGCTGTGTGGTGCCACTTCTTCCCCATCCTGCGCAGCAACATCAAAATCAATTTAGGCAGTCCTGATTTCTCAAAGACAATCAGAGA
AGTCATGAGCAAGGACAGAGATGAAGTTTACCTCAGGGCCTGTGGGAAGATTGTTCCGACAGTGATCAGATCAGAGACCCTCTTGAGTCAAAGGCTCTGGTCCCCCCCTC
CTTGCTGTTCGTGGAAGATCAACACAGACGCTTCGTGGCTGGAAAAGGAAAGGCGTGGTGGGGTTGGATGGATCGCTCGTGACTCCTTAGGTTCTCTCATCTTTGCTGGT
TTCAAGCCGCTGAAGCGGAAATGGTCTATCAAGTGTCTGGAGATGCTGGCCGTGGCTGAGAGTCTTAAGTGCCTGCTTGAAAATGTCAACAGGCCTTTTCCAAAAATCAT
TGTTGAATCGGATTTCGCAGATGTTGTCGCCATCCTCAATCGGATTTCGGCTGATTGTTCGGAGGTTGCTCTGTTTGCGGAGGAAGTGCAGCGTTTGGTCAAGCTTTCGG
GTGCGGTTTCTTTCTCCTCTATTCCGAGGGGTTCAAATCTTGTAGCGCACTATATTGCGCGTTCTGCAACTGCTTGTGATTCTCCAAGCAAATCTAGTTGTTTTTTGGGT
TCTTCCATATCAGAAGACGAACAGATTTCTTTGGGCCCTTTGCCTAGTTGGCTATCATCCTCCTTAATTAAGGAGTTTTCTGTTGGTGTTGGTTGTTGA
Protein sequenceShow/hide protein sequence
MWTCSFGKAVWCHFFPILRSNIKINLGSPDFSKTIREVMSKDRDEVYLRACGKIVPTVIRSETLLSQRLWSPPPCCSWKINTDASWLEKERRGGVGWIARDSLGSLIFAG
FKPLKRKWSIKCLEMLAVAESLKCLLENVNRPFPKIIVESDFADVVAILNRISADCSEVALFAEEVQRLVKLSGAVSFSSIPRGSNLVAHYIARSATACDSPSKSSCFLG
SSISEDEQISLGPLPSWLSSSLIKEFSVGVGC