CuGenDBv2

Gene ID	Spg006926
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	ribonuclease P protein subunit p38
Genome location	scaffold10:39873627..39876599
RNA-Seq Expression	Spg006926
Synteny	Spg006926
Gene Ontology terms	GO:0043232 - intracellular non-membrane-bounded organelle (cellular component)
InterPro domains	IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 IPR029064 - 50S ribosomal protein L30e-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6579150.1 hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sororia]

1.4e-71

84.53

Show/hide

Query:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL
        MGKKAKSS   A VQSK ++DSYEGERLDELLQSIQREIKRAR LNAESLPEKIW+KKQFA+GVNEVTRVLERMTPS DSA I NPNYKACTV+LQAILL
Subjt:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT
        TADCNPRWLTNHVPSLAISRKVPLILVK KEGSLRLGELVNLKTAIAIGI             KANGSPVNQLIGEILQRT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT

XP_022938626.1 ribonuclease P protein subunit p38 [Cucurbita moschata]

1.7e-72

85.08

Show/hide

Query:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL
        MGKKAKSS   A VQSK ++DSYEGERLDELLQSIQREIKRAR LNAESLPEKIW+KKQFA+GVNEVTRVLERMTPSGDSA I NPNYKACTV+LQAILL
Subjt:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT
        TADCNPRWLTNHVPSLAISRKVPLILVK KEGSLRLGELVNLKTAIAIGI             KANGSPVNQLIGEILQRT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT

XP_022993803.1 ribonuclease P protein subunit p38 [Cucurbita maxima]

3.2e-68

82.32

Show/hide

Query:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL
        MGKKAKSS   A VQSK ++DSYEGERLDELLQSIQREIKRAR LNA+SLPEKIW+KKQFA+GVNEVTRVLERMTPS DSA + NPNYKACTV+LQAILL
Subjt:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT
        TADCNPRWLTNHVPSLAISRKVPLILVK KEGSLRLGELVNLKTAIAIGI             K NGSPVNQLIGEIL RT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT

XP_023549838.1 ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo]

4.1e-71

83.43

Show/hide

Query:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL
        MGKKAKSS   A VQSK ++DSYEGERLDELLQSIQREIKRAR LNAE+LPEKIW+KKQFA+GVNEVTRVLERMTPS DSA I NPNYKACTV+LQAILL
Subjt:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT
        TADCNPRWLTNHVPSLAISRKVPLILVK KEGSLRLGELVNLKTAIAIGI             KANGSP+NQLIGEILQRT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT

XP_038875290.1 ribonuclease P protein subunit p38 [Benincasa hispida]

7.7e-70

82.22

Show/hide

Query:  MGKKAKSSAS---VQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL
        MGKKAKSSA    +QSKP++DSYEGERLDE LQSIQREIK AR LNAESLPEKIW+KKQFA+GVNEVTRVLERMTPSGDSA I NPNYKACTVKLQA+LL
Subjt:  MGKKAKSSAS---VQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQR
        TA+CNPRWLTNHVPSLA+SRKVPLILVK KEGSLRLGELVNLKTAIAIGI             KANGSPVNQLI EILQR
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CQV2 ribonuclease P protein subunit p38 isoform X5

3.1e-64

76.63

Show/hide

Query:  MGKKAKSS----ASVQSKPDQD-SYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAI
        MGK  KSS    A++QSKP +D SYEGERLDELL SIQREIK AR LNAESLPEK W+KKQFA+GVNEVTR LERMTP GDSA + NPNYKAC VKLQAI
Subjt:  MGKKAKSS----ASVQSKPDQD-SYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAI

Query:  LLTADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRTR
        LLTA+CNPRWLTNHVP LA+SRKVPLILVK KEGSLRLGELVNLKTAIAIGI             K+NGSPVNQLI EILQRT+
Subjt:  LLTADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRTR

A0A1S3CR39 ribonuclease P protein subunit p38 isoform X6

1.2e-65

77.05

Show/hide

Query:  MGKKAKSS----ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAIL
        MGK  KSS    A++QSKP +DSYEGERLDELL SIQREIK AR LNAESLPEK W+KKQFA+GVNEVTR LERMTP GDSA + NPNYKAC VKLQAIL
Subjt:  MGKKAKSS----ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAIL

Query:  LTADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRTR
        LTA+CNPRWLTNHVP LA+SRKVPLILVK KEGSLRLGELVNLKTAIAIGI             K+NGSPVNQLI EILQRT+
Subjt:  LTADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRTR

A0A6J1CZ90 ribonuclease P protein subunit p38

4.3e-66

77.9

Show/hide

Query:  MGKKAKSSAS---VQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL
        MGKKAKSSA+   V+SK  QD YEG+RLDELLQSIQREIKRAR+LNAESLP KIW+KKQFAVGVNEVTRVLERMTPSGDSA I NPNYKACTV+LQAILL
Subjt:  MGKKAKSSAS---VQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT
          DCNPRWLTNH+P+LA+SR VPL+L+K KEGSLRLGELVNLKTAIAIGI             KANGS +NQLIGEILQ T
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT

A0A6J1FDN9 ribonuclease P protein subunit p38

8.0e-73

85.08

Show/hide

Query:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL
        MGKKAKSS   A VQSK ++DSYEGERLDELLQSIQREIKRAR LNAESLPEKIW+KKQFA+GVNEVTRVLERMTPSGDSA I NPNYKACTV+LQAILL
Subjt:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT
        TADCNPRWLTNHVPSLAISRKVPLILVK KEGSLRLGELVNLKTAIAIGI             KANGSPVNQLIGEILQRT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT

A0A6J1K3C5 ribonuclease P protein subunit p38

1.6e-68

82.32

Show/hide

Query:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL
        MGKKAKSS   A VQSK ++DSYEGERLDELLQSIQREIKRAR LNA+SLPEKIW+KKQFA+GVNEVTRVLERMTPS DSA + NPNYKACTV+LQAILL
Subjt:  MGKKAKSS---ASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILL

Query:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT
        TADCNPRWLTNHVPSLAISRKVPLILVK KEGSLRLGELVNLKTAIAIGI             K NGSPVNQLIGEIL RT
Subjt:  TADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRT

SwissProt top hits

e value

%identity

Alignment

P78345 Ribonuclease P protein subunit p38

4.5e-04

31.25

Show/hide

Query:  IKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIK
        ++KQ A+GVNEVTR LER                    +L  +L+     P  +T+H+  L++SR VP   V     S R+  ++ LK  +A+  K
Subjt:  IKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIK

Q32LC1 Ribonuclease P protein subunit p38

1.0e-03

31.13

Show/hide

Query:  IKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREE
        ++KQ A+G+NEVTR LER                    +L   L      P  +T+H+  L++SR VP   V     S RL  ++ LK  +A+G K    
Subjt:  IKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILLTADCNPRWLTNHVPSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREE

Query:  ILDNEL
            EL
Subjt:  ILDNEL

Arabidopsis top hits

e value

%identity

Alignment

AT4G01790.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

4.6e-36

49.71

Show/hide

Query:  KSSASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILLTADCNPRW
        K  A      + D YEGERL  LL  IQR I+ +++ N  SLPEKIW+KKQ A+G+NEVTRVLERM P+  S    NP       +LQ ++L ADC PR 
Subjt:  KSSASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILLTADCNPRW

Query:  LTNHVPSLAISRKVPLILVK-GKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQR
        LT H+P+LA SR VP++ V+  K  SLRLGELV LKTA+AIGIK R             G+ +N L+ +IL R
Subjt:  LTNHVPSLAISRKVPLILVK-GKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAAAGAAGGCTAAATCTTCTGCTTCTGTTCAATCCAAGCCTGACCAAGATTCCTATGAGGGGGAACGTCTCGATGAGTTGCTACAGTCGATTCAGAGGGAGATAAA
GAGAGCAAGAGTTCTGAACGCGGAATCCTTGCCGGAAAAAATTTGGATCAAGAAACAATTCGCAGTTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGACGCCAA
GTGGAGATTCTGCTTGCATAACGAACCCTAACTATAAGGCGTGTACAGTCAAGCTTCAGGCTATACTGTTAACAGCTGATTGCAACCCTCGATGGCTGACAAACCATGTG
CCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGGTAAAGAAGGATCTTTAAGGTTAGGTGAACTCGTCAACCTTAAAACAGCAATTGCAATTGGAAT
AAAGGTGAGGGAGGAAATATTAGATAATGAATTGTCTTTAAAGGCGAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTCAACGAACAAGGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGKKAKSSASVQSKPDQDSYEGERLDELLQSIQREIKRARVLNAESLPEKIWIKKQFAVGVNEVTRVLERMTPSGDSACITNPNYKACTVKLQAILLTADCNPRWLTNHV
PSLAISRKVPLILVKGKEGSLRLGELVNLKTAIAIGIKVREEILDNELSLKANGSPVNQLIGEILQRTR

Spg006926 (gene) of Sponge gourd (cylindrica) v1 genome