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Spg006954 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006954
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit
Genome locationscaffold10:38010742..38011197
RNA-Seq ExpressionSpg006954
SyntenySpg006954
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601844.1 hypothetical protein SDJN03_07077, partial [Cucurbita argyrosperma subsp. sororia]4.7e-5275.62Show/hide
Query:  MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR---TAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSD
        M S+N LLS+  ++SAP L PPISPSA RRR R    A TVTASSR +E AD+N+YYA GKLVDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+
Subjt:  MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR---TAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSD

Query:  YDSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC
        YDS+ICEALGYLQSHLMNTRPSVALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Subjt:  YDSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC

KAG7032552.1 hypothetical protein SDJN02_06601, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-5276.73Show/hide
Query:  MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR--TAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDY
        M SVN LLS+  ++SAP L PPISPSA RRR R   A TVTASSR +E AD+N+YYA GKLVDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+Y
Subjt:  MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR--TAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDY

Query:  DSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC
        DS+ICEALGYLQSHLMNTRPSVALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Subjt:  DSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC

XP_022952614.1 uncharacterized protein LOC111455246 [Cucurbita moschata]8.0e-5275.95Show/hide
Query:  MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR-TAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYD
        M S+N LLS+  ++SAP L PPISPSA RRR R  A TVTASS+ +E AD+N+YYA GKLVDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YD
Subjt:  MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR-TAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYD

Query:  SHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC
        S+ICEALGYLQSHLMNTRPSVALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Subjt:  SHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC

XP_022989988.1 uncharacterized protein LOC111487016 [Cucurbita maxima]4.0e-5175.32Show/hide
Query:  MKSVNCLLSV--SNSAPFLPPPISPSA-SRRRCRTAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYD
        M S+N LLS+  ++SAP L PPISPS+  RRR   A TVTASSR +E AD+N+YYA GKLVDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YD
Subjt:  MKSVNCLLSV--SNSAPFLPPPISPSA-SRRRCRTAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYD

Query:  SHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC
        S+ICEALGYLQSHLMNTRPSVALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Subjt:  SHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC

XP_023553368.1 uncharacterized protein LOC111810800 [Cucurbita pepo subsp. pepo]8.0e-5275.47Show/hide
Query:  MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR--TAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDY
        M S+N LLS+  ++SAP L PPISPSA RRR R   A TVTASSR +E AD+N+YYA GKLVDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+Y
Subjt:  MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR--TAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDY

Query:  DSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC
        DS+ICEALGYLQSHLMNTRPSVALGML L++LSVPVSSAV+LHR IEIA  LL   RLC
Subjt:  DSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC

TrEMBL top hitse value%identityAlignment
A0A6J1DHC5 uncharacterized protein LOC1110200631.0e-4471.05Show/hide
Query:  MKSVNCLLSVSNSAPFLPPPISP-SASRRRCRTAVTVTASSRSREADN---NNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYD
        M+S+N + S +NS  FLP   SP S  RRR      VTASSRSREADN   NN+YASGKLV+ESMIVLRKRIHE+KMAE+   PPADWLEWEKR Y DYD
Subjt:  MKSVNCLLSVSNSAPFLPPPISP-SASRRRCRTAVTVTASSRSREADN---NNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYD

Query:  SHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL
        SH+CEALGYLQSHLMNTRPSVAL  L L++LSVPVSSA++LHR   IAAALL
Subjt:  SHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL

A0A6J1FMN3 uncharacterized protein LOC1114453381.4e-4975.86Show/hide
Query:  LSVSNSAPFLP-PPISPSASRRRCRTAVTVTASSR---SREADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEAL
        +S +NSAPFL   PIS S+ RRR     TV ASSR   S  ++NNNYYASGKLVDESMIVLRKRIHEIKM E+SH+PP+DWL+WEKRCYSDYDSHICEAL
Subjt:  LSVSNSAPFLP-PPISPSASRRRCRTAVTVTASSR---SREADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEAL

Query:  GYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL
        GYLQSHLMNTRPSVALG+L+L++LSVP+SSAV+LHR I+IAAALL
Subjt:  GYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL

A0A6J1GM73 uncharacterized protein LOC1114552463.9e-5275.95Show/hide
Query:  MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR-TAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYD
        M S+N LLS+  ++SAP L PPISPSA RRR R  A TVTASS+ +E AD+N+YYA GKLVDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YD
Subjt:  MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR-TAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYD

Query:  SHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC
        S+ICEALGYLQSHLMNTRPSVALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Subjt:  SHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC

A0A6J1JRY7 uncharacterized protein LOC1114870161.9e-5175.32Show/hide
Query:  MKSVNCLLSV--SNSAPFLPPPISPSA-SRRRCRTAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYD
        M S+N LLS+  ++SAP L PPISPS+  RRR   A TVTASSR +E AD+N+YYA GKLVDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YD
Subjt:  MKSVNCLLSV--SNSAPFLPPPISPSA-SRRRCRTAVTVTASSRSRE-ADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYD

Query:  SHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC
        S+ICEALGYLQSHLMNTRPSVALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Subjt:  SHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC

A0A6J1JZG1 uncharacterized protein LOC1114892624.7e-5074.83Show/hide
Query:  LSVSNSAPFLP-PPISPSASRRRCRTAVTVTASSRSREA-----DNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICE
        +S +NSAPFL   PISPS+ RRR     TV ASSR  ++     +NNNYYASGKLVDESMIVLRKRIHEIKM EQSH+PP+DWL+WEKRCYSDYDSHICE
Subjt:  LSVSNSAPFLP-PPISPSASRRRCRTAVTVTASSRSREA-----DNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICE

Query:  ALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL
        ALGYLQSHLMNTRPSV+LG+L+L++LSVP+SSAV+LHR I+IAAALL
Subjt:  ALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15010.1 unknown protein1.2e-2656Show/hide
Query:  NYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL
        +YY  G+ VDE+M+VLRKRIHE+KM E++ +PP+ W++WEKR Y +YD+ IC+AL  LQ+ LMN+RPSVA G  +L+ +SVPVSSAV   R++++A  LL
Subjt:  NYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL

AT2G01300.1 unknown protein6.6e-2853.21Show/hide
Query:  SRSREADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHR
        S +  +  ++YY  G+LVDE+MIVLRKRIHE+KM E++++PP+ W++WEKR Y+ YDS IC+++G LQS LMN+RP+VA+  L+ + +SVPVSS V+  R
Subjt:  SRSREADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHR

Query:  LIEIAAALL
        LI++   LL
Subjt:  LIEIAAALL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCCGTAAATTGCCTCCTCTCAGTCTCCAATTCCGCTCCCTTCCTCCCCCCTCCGATCTCGCCTTCCGCCTCCCGCCGTCGCTGTCGCACCGCCGTGACTGTTAC
GGCGTCGTCTCGATCGAGAGAGGCCGACAACAACAATTACTACGCCAGCGGAAAGCTCGTCGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGATGG
CCGAGCAGAGCCACGATCCGCCGGCGGATTGGCTCGAGTGGGAGAAACGCTGCTATTCGGACTACGACTCGCACATCTGTGAAGCCCTTGGCTACCTTCAGTCGCACTTG
ATGAACACCAGGCCCAGCGTCGCCTTGGGAATGCTCGTTCTCGTTTCTCTCAGTGTTCCGGTCTCCTCCGCCGTCGTTCTCCACCGCTTGATCGAGATCGCCGCCGCGCT
TCTCCGTCTCTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATCCGTAAATTGCCTCCTCTCAGTCTCCAATTCCGCTCCCTTCCTCCCCCCTCCGATCTCGCCTTCCGCCTCCCGCCGTCGCTGTCGCACCGCCGTGACTGTTAC
GGCGTCGTCTCGATCGAGAGAGGCCGACAACAACAATTACTACGCCAGCGGAAAGCTCGTCGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGATGG
CCGAGCAGAGCCACGATCCGCCGGCGGATTGGCTCGAGTGGGAGAAACGCTGCTATTCGGACTACGACTCGCACATCTGTGAAGCCCTTGGCTACCTTCAGTCGCACTTG
ATGAACACCAGGCCCAGCGTCGCCTTGGGAATGCTCGTTCTCGTTTCTCTCAGTGTTCCGGTCTCCTCCGCCGTCGTTCTCCACCGCTTGATCGAGATCGCCGCCGCGCT
TCTCCGTCTCTGTTAG
Protein sequenceShow/hide protein sequence
MKSVNCLLSVSNSAPFLPPPISPSASRRRCRTAVTVTASSRSREADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHL
MNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALLRLC