; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006983 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006983
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold10:39649835..39651235
RNA-Seq ExpressionSpg006983
SyntenySpg006983
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.6e-1334.68Show/hide
Query:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIF---STKSMLFDVDNSVTFLDSSLTKAIWRDRYPKK
        LSK +NAT+EE+W P ++ W+L   R L D E   W +L   L  + L+  ++  IW+    G +   S K  L     +    + +  + +W+ + PKK
Subjt:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIF---STKSMLFDVDNSVTFLDSSLTKAIWRDRYPKK

Query:  MKFLLWEIAHQAINTKD-LQKRMP
         KF +W + H++INT D LQKR+P
Subjt:  MKFLLWEIAHQAINTKD-LQKRMP

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.6e-1332.58Show/hide
Query:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIFSTKSM---LFDVDNSVTFLDSSLTKAIWRDRYPKK
        LS  K  +V+++W+P    W++ + R L+D E + W ++  +L   +  +     +W + +N IF T S+   L +   S T    SL K +W+  +PKK
Subjt:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIFSTKSM---LFDVDNSVTFLDSSLTKAIWRDRYPKK

Query:  MKFLLWEIAHQAINTKD-LQKRMPCMEIPSGW
         KF +W + H  INT D LQKR+P   +   W
Subjt:  MKFLLWEIAHQAINTKD-LQKRMPCMEIPSGW

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.6e-1332.58Show/hide
Query:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIFSTKSM---LFDVDNSVTFLDSSLTKAIWRDRYPKK
        LS  K  +V+++W+P    W++ + R L+D E + W ++  +L   +  +     +W + +N IF T S+   L +   S T    SL K +W+  +PKK
Subjt:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIFSTKSM---LFDVDNSVTFLDSSLTKAIWRDRYPKK

Query:  MKFLLWEIAHQAINTKD-LQKRMPCMEIPSGW
         KF +W + H  INT D LQKR+P   +   W
Subjt:  MKFLLWEIAHQAINTKD-LQKRMPCMEIPSGW

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.6e-1334.68Show/hide
Query:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIF---STKSMLFDVDNSVTFLDSSLTKAIWRDRYPKK
        LSK +NAT+EE+W P ++ W+L   R L D E   W +L   L  + L+  ++  IW+    G +   S K  L     +    + +  + +W+ + PKK
Subjt:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIF---STKSMLFDVDNSVTFLDSSLTKAIWRDRYPKK

Query:  MKFLLWEIAHQAINTKD-LQKRMP
         KF +W + H++INT D LQKR+P
Subjt:  MKFLLWEIAHQAINTKD-LQKRMP

TYK07901.1 DUF21 domain-containing protein [Cucumis melo var. makuwa]1.3e-1049.4Show/hide
Query:  TLVEKLSLISLNNGQDGICWTLDGSGSYTAKSMFQKMTTCSPKIQQNMCNMIWKYKCPKKVKVFLWSLAYRNLNTDDKIQKKF
        T++E L   +  + +D + WTL+ +GS+T KS F K+T  SP I   +   IWK K  K+VK FLWSLAYR+LNT  KIQK F
Subjt:  TLVEKLSLISLNNGQDGICWTLDGSGSYTAKSMFQKMTTCSPKIQQNMCNMIWKYKCPKKVKVFLWSLAYRNLNTDDKIQKKF

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein1.8e-1334.68Show/hide
Query:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIF---STKSMLFDVDNSVTFLDSSLTKAIWRDRYPKK
        LSK +NAT+EE+W P ++ W+L   R L D E   W +L   L  + L+  ++  IW+    G +   S K  L     +    + +  + +W+ + PKK
Subjt:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIF---STKSMLFDVDNSVTFLDSSLTKAIWRDRYPKK

Query:  MKFLLWEIAHQAINTKD-LQKRMP
         KF +W + H++INT D LQKR+P
Subjt:  MKFLLWEIAHQAINTKD-LQKRMP

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.8e-1332.58Show/hide
Query:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIFSTKSM---LFDVDNSVTFLDSSLTKAIWRDRYPKK
        LS  K  +V+++W+P    W++ + R L+D E + W ++  +L   +  +     +W + +N IF T S+   L +   S T    SL K +W+  +PKK
Subjt:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIFSTKSM---LFDVDNSVTFLDSSLTKAIWRDRYPKK

Query:  MKFLLWEIAHQAINTKD-LQKRMPCMEIPSGW
         KF +W + H  INT D LQKR+P   +   W
Subjt:  MKFLLWEIAHQAINTKD-LQKRMPCMEIPSGW

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.8e-1332.58Show/hide
Query:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIFSTKSM---LFDVDNSVTFLDSSLTKAIWRDRYPKK
        LS  K  +V+++W+P    W++ + R L+D E + W ++  +L   +  +     +W + +N IF T S+   L +   S T    SL K +W+  +PKK
Subjt:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIFSTKSM---LFDVDNSVTFLDSSLTKAIWRDRYPKK

Query:  MKFLLWEIAHQAINTKD-LQKRMPCMEIPSGW
         KF +W + H  INT D LQKR+P   +   W
Subjt:  MKFLLWEIAHQAINTKD-LQKRMPCMEIPSGW

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein1.8e-1334.68Show/hide
Query:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIF---STKSMLFDVDNSVTFLDSSLTKAIWRDRYPKK
        LSK +NAT+EE+W P ++ W+L   R L D E   W +L   L  + L+  ++  IW+    G +   S K  L     +    + +  + +W+ + PKK
Subjt:  LSKCKNATVEEVWSPISSFWDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIF---STKSMLFDVDNSVTFLDSSLTKAIWRDRYPKK

Query:  MKFLLWEIAHQAINTKD-LQKRMP
         KF +W + H++INT D LQKR+P
Subjt:  MKFLLWEIAHQAINTKD-LQKRMP

A0A5D3C7R2 DUF21 domain-containing protein6.3e-1149.4Show/hide
Query:  TLVEKLSLISLNNGQDGICWTLDGSGSYTAKSMFQKMTTCSPKIQQNMCNMIWKYKCPKKVKVFLWSLAYRNLNTDDKIQKKF
        T++E L   +  + +D + WTL+ +GS+T KS F K+T  SP I   +   IWK K  K+VK FLWSLAYR+LNT  KIQK F
Subjt:  TLVEKLSLISLNNGQDGICWTLDGSGSYTAKSMFQKMTTCSPKIQQNMCNMIWKYKCPKKVKVFLWSLAYRNLNTDDKIQKKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGCTGGATGACCTTAGTTGAGAAGCTCAGCTTGATTAGCTTAAATAATGGCCAAGATGGGATTTGTTGGACCCTTGATGGTTCGGGTAGCTACACGGCAAAATC
CATGTTCCAGAAAATGACCACTTGTTCGCCCAAAATCCAGCAGAATATGTGCAACATGATCTGGAAGTATAAATGCCCGAAGAAAGTTAAAGTCTTCTTGTGGTCTTTAG
CCTACCGCAACCTTAATACAGATGATAAAATTCAAAAGAAGTTCAATAGTTGGCTGTCCAAGTGCAAAAACGCCACTGTCGAAGAAGTGTGGAGCCCAATATCAAGCTTT
TGGGACCTTAAGCTTGGCAGGACCTTGAAGGATGAAGAGACCTCCAAATGGATGGATCTATATTACGCTCTCTCGCCAGTTGTTCTCTCTCAAAGGGAAGACACTTGGAT
TTGGTCAGTTGGCACAAATGGCATCTTCTCCACCAAATCTATGTTATTTGACGTGGACAATTCAGTTACATTTTTGGATTCATCTTTGACCAAAGCCATTTGGAGAGATC
GGTATCCAAAGAAGATGAAATTTCTTTTATGGGAGATTGCACACCAAGCCATCAATACAAAAGATCTCCAAAAACGAATGCCATGCATGGAAATTCCCTCTGGTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAGCTGGATGACCTTAGTTGAGAAGCTCAGCTTGATTAGCTTAAATAATGGCCAAGATGGGATTTGTTGGACCCTTGATGGTTCGGGTAGCTACACGGCAAAATC
CATGTTCCAGAAAATGACCACTTGTTCGCCCAAAATCCAGCAGAATATGTGCAACATGATCTGGAAGTATAAATGCCCGAAGAAAGTTAAAGTCTTCTTGTGGTCTTTAG
CCTACCGCAACCTTAATACAGATGATAAAATTCAAAAGAAGTTCAATAGTTGGCTGTCCAAGTGCAAAAACGCCACTGTCGAAGAAGTGTGGAGCCCAATATCAAGCTTT
TGGGACCTTAAGCTTGGCAGGACCTTGAAGGATGAAGAGACCTCCAAATGGATGGATCTATATTACGCTCTCTCGCCAGTTGTTCTCTCTCAAAGGGAAGACACTTGGAT
TTGGTCAGTTGGCACAAATGGCATCTTCTCCACCAAATCTATGTTATTTGACGTGGACAATTCAGTTACATTTTTGGATTCATCTTTGACCAAAGCCATTTGGAGAGATC
GGTATCCAAAGAAGATGAAATTTCTTTTATGGGAGATTGCACACCAAGCCATCAATACAAAAGATCTCCAAAAACGAATGCCATGCATGGAAATTCCCTCTGGTTGGTGA
Protein sequenceShow/hide protein sequence
MNSWMTLVEKLSLISLNNGQDGICWTLDGSGSYTAKSMFQKMTTCSPKIQQNMCNMIWKYKCPKKVKVFLWSLAYRNLNTDDKIQKKFNSWLSKCKNATVEEVWSPISSF
WDLKLGRTLKDEETSKWMDLYYALSPVVLSQREDTWIWSVGTNGIFSTKSMLFDVDNSVTFLDSSLTKAIWRDRYPKKMKFLLWEIAHQAINTKDLQKRMPCMEIPSGW