; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006984 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006984
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationscaffold10:38243552..38245468
RNA-Seq ExpressionSpg006984
SyntenySpg006984
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
IPR012337 - Ribonuclease H-like superfamily
IPR014724 - RNA polymerase Rpb2, OB-fold
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5451602.1 hypothetical protein F2P56_026695 [Juglans regia]6.5e-2128.82Show/hide
Query:  LLGRGSGFALHSGHEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVE--TGDILVDQAILSSD---VEVIRKIPISNHSEDKLVWHYDKLG
        LL  G  + + +G  I+    S  P    +E+      L      N I+M+   +E  TG   +D      D     +I KI I    ED   W  ++ G
Subjt:  LLGRGSGFALHSGHEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVE--TGDILVDQAILSSD---VEVIRKIPISNHSEDKLVWHYDKLG

Query:  RYTVKSGYKLFM--KAKI---DDKWFDISSKVSKEDLGLVAVTCWAIWMDRNKFVHEDPIPPA----NIRSQWISEYLRSSFVEANSKAGNMHQSFVNHS
         Y+VKSGYK+     ++I     +   I  K   E L    V CWA+W  RN+F++E  + P     N      S Y +   ++  SK  N   S     
Subjt:  RYTVKSGYKLFM--KAKI---DDKWFDISSKVSKEDLGLVAVTCWAIWMDRNKFVHEDPIPPA----NIRSQWISEYLRSSFVEANSKAGNMHQSFVNHS

Query:  FPSLSEIWSPPPIDFWKINSD-ATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSE
               WSPPP  F K+N D A + DH  + GIG++ R+ +G +I A S     V      E   +L G++     G  K+++E+DC I++N L   + 
Subjt:  FPSLSEIWSPPPIDFWKINSD-ATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSE

Query:  VWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAK
          +    L+ +I  +  G +EV+   V R GN  A  LA+
Subjt:  VWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAK

XP_024041100.1 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina]6.5e-2135.05Show/hide
Query:  DISSKVSKEDLGLVAVTCWAIWMDRNKFVH----EDPIPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKD
        D++ K  K+DLGL+  TCWAIW  RN+ V+    EDP   A   +  +  YLR        K  N+      H+  +  ++W+PPPI ++K+N DA  + 
Subjt:  DISSKVSKEDLGLVAVTCWAIWMDRNKFVH----EDPIPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKD

Query:  HPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINF-LSKSSEVWSIAEGLVEEIWVVADGLREVKFQF
           + G+G+V R+S G I+ A+   +    +  C E +A+L GI+ A    C+ IIIESD   V+   L + S +  I    VEEI            QF
Subjt:  HPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINF-LSKSSEVWSIAEGLVEEIWVVADGLREVKFQF

Query:  VPRKGNRVADYLAK
        V R  N VA  LAK
Subjt:  VPRKGNRVADYLAK

XP_024041103.1 uncharacterized protein LOC112098855 isoform X2 [Citrus clementina]6.5e-2135.05Show/hide
Query:  DISSKVSKEDLGLVAVTCWAIWMDRNKFVH----EDPIPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKD
        D++ K  K+DLGL+  TCWAIW  RN+ V+    EDP   A   +  +  YLR        K  N+      H+  +  ++W+PPPI ++K+N DA  + 
Subjt:  DISSKVSKEDLGLVAVTCWAIWMDRNKFVH----EDPIPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKD

Query:  HPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINF-LSKSSEVWSIAEGLVEEIWVVADGLREVKFQF
           + G+G+V R+S G I+ A+   +    +  C E +A+L GI+ A    C+ IIIESD   V+   L + S +  I    VEEI            QF
Subjt:  HPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINF-LSKSSEVWSIAEGLVEEIWVVADGLREVKFQF

Query:  VPRKGNRVADYLAK
        V R  N VA  LAK
Subjt:  VPRKGNRVADYLAK

XP_024041104.1 uncharacterized protein LOC112098855 isoform X3 [Citrus clementina]6.5e-2135.05Show/hide
Query:  DISSKVSKEDLGLVAVTCWAIWMDRNKFVH----EDPIPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKD
        D++ K  K+DLGL+  TCWAIW  RN+ V+    EDP   A   +  +  YLR        K  N+      H+  +  ++W+PPPI ++K+N DA  + 
Subjt:  DISSKVSKEDLGLVAVTCWAIWMDRNKFVH----EDPIPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKD

Query:  HPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINF-LSKSSEVWSIAEGLVEEIWVVADGLREVKFQF
           + G+G+V R+S G I+ A+   +    +  C E +A+L GI+ A    C+ IIIESD   V+   L + S +  I    VEEI            QF
Subjt:  HPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINF-LSKSSEVWSIAEGLVEEIWVVADGLREVKFQF

Query:  VPRKGNRVADYLAK
        V R  N VA  LAK
Subjt:  VPRKGNRVADYLAK

XP_024046732.1 uncharacterized protein LOC112101057 [Citrus clementina]1.1e-2026.22Show/hide
Query:  MLGSWVETGDILVDQAILSSDVEVIRKIPISNH-SEDKLVWHYDKLGRYTVKSGYKL-----------------------------------------FM
        ++GS  +  +IL++Q       EVI+ IP+  +   D+ VWHYDK G YTVKSGY++                                         FM
Subjt:  MLGSWVETGDILVDQAILSSDVEVIRKIPISNH-SEDKLVWHYDKLGRYTVKSGYKL-----------------------------------------FM

Query:  KAKIDDKWFDIS----------------------SKVSKEDLGLVAVTCWAIWMDRNKFVHEDP-IPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVN
        + K+  K +  S                       K+S  ++  VAV  W IW  RNK + E   + P ++ ++        + VEA  +     Q+   
Subjt:  KAKIDDKWFDIS----------------------SKVSKEDLGLVAVTCWAIWMDRNKFVHEDP-IPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVN

Query:  HSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFL----
            S  + W PPP+ F+K+N DA         G+G+V RN +G +I  +   +        AE +A+  G+  A       +IIE+DC  V N      
Subjt:  HSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFL----

Query:  -SKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAKR
         S+   VW+I+     +I    +  + +  Q VPR  N  A  LAKR
Subjt:  -SKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAKR

TrEMBL top hitse value%identityAlignment
A0A0D2MPE5 RNase H domain-containing protein4.6e-2035.12Show/hide
Query:  KEDLGLVAVTCWAIWMDRNKFVHEDPIPPANIRS-QWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLV
        K   GL+ V+ WAIW  RNKFVHE      N++S + I  ++RS  +E  S A ++      H  P     WSPPP  ++KIN DA          +G +
Subjt:  KEDLGLVAVTCWAIWMDRNKFVHEDPIPPANIRS-QWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLV

Query:  CRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADY
         RN+EG I+  +   S  +     AE  A+L G++ A  +G +K+I+ESD ++V+N + KSSE +S +     ++  +A      +FQFV R+GN  A  
Subjt:  CRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADY

Query:  LAKRD
        L   D
Subjt:  LAKRD

A0A1U8J822 uncharacterized protein LOC1079027188.6e-1932.51Show/hide
Query:  KEDLGLVAVTCWAIWMDRNKFVHEDPIPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEI--WSPPPIDFWKINSDATWKDHPPEMGIGL
        K   G++ VT W IW  RNKF+HE  +       + I  ++RS  +E  S A N+         P L  +  WSPPP  + KIN D            G 
Subjt:  KEDLGLVAVTCWAIWMDRNKFVHEDPIPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEI--WSPPPIDFWKINSDATWKDHPPEMGIGL

Query:  VCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVAD
        + RN EG I+ +       V     AE  A+L G++ A  LG + +I+ESD ++V+N + KSSE +S +     +   +A   +  +FQF+ R+GNR   
Subjt:  VCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVAD

Query:  YLA
         +A
Subjt:  YLA

A0A2N9E147 Reverse transcriptase domain-containing protein4.6e-2024.33Show/hide
Query:  EEMRFLIALSRPYVIFFSWVSFLVGKAAVGLRQILLGRGSGFALHSGHEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILVDQAI
        +E+  +I    P+   F+W S L      G R+I +  G+ + + +G  I+       P   T ++    + L  N   + ++   + +     L+D   
Subjt:  EEMRFLIALSRPYVIFFSWVSFLVGKAAVGLRQILLGRGSGFALHSGHEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILVDQAI

Query:  LSSDVEVIRKIPISNHSE-DKLVWHYDKLGRYTVKSGYKLFMKAKIDDKWFDISSKVSKEDLGLVAVTCWAIWMDRNKFVHEDPIPPANIRSQWISEYLR
          S+ E I+ IP+S  S  D ++W   K G Y+V+S Y L MKAK   +  + S  ++  D+ L+    W +W+ RN                W ++++ 
Subjt:  LSSDVEVIRKIPISNHSE-DKLVWHYDKLGRYTVKSGYKLFMKAKIDDKWFDISSKVSKEDLGLVAVTCWAIWMDRNKFVHEDPIPPANIRSQWISEYLR

Query:  SSFVEANSKAGNMHQSFVNHSFPSLSEI------WSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRA
        +   +   +AG++   F+     S  +I      W+PP    +KIN    W+      G G+V R+S G++I A    S  + +       AI   +  A
Subjt:  SSFVEANSKAGNMHQSFVNHSFPSLSEI------WSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRA

Query:  QTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAKRD-KLSKC
        + + C+ +I+E DC  ++  L       +    LV+EI  ++       F  +PR  N V+  LAK     S C
Subjt:  QTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAKRD-KLSKC

A0A2N9FM05 Reverse transcriptase domain-containing protein5.1e-1924.24Show/hide
Query:  PYVIFFSWVSFLVGKAAVGLRQILLGRGSGFALHSGHEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILVDQAILSSDVEVIRKI
        P+   F+W S L      G R+I +  G+ + + +G  I+       P   T ++    + L  N   + ++   + +     L+D     S+ + I+ I
Subjt:  PYVIFFSWVSFLVGKAAVGLRQILLGRGSGFALHSGHEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILVDQAILSSDVEVIRKI

Query:  PISNHSE-DKLVWHYDKLGRYTVKSGYKLFMKAKIDDKWFDISSKVSKEDLGLVAVTCWAIWMDRNKFVHEDPIPPANIRSQWISEYLRSSFVEANSKAG
        P+S  S  D ++W   K G Y+V+S Y L MKAK   +  + S  ++  D+ L+    W +W+ RN                W ++++ +   +   +AG
Subjt:  PISNHSE-DKLVWHYDKLGRYTVKSGYKLFMKAKIDDKWFDISSKVSKEDLGLVAVTCWAIWMDRNKFVHEDPIPPANIRSQWISEYLRSSFVEANSKAG

Query:  NMHQSFVNHSFPSLSEI------WSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIE
        ++   F+     S  +I      W+PP    +KIN    W+      G G+V R+S G++I A    S  + +       AI   +  A+ + C+ +I+E
Subjt:  NMHQSFVNHSFPSLSEI------WSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIE

Query:  SDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAKRD-KLSKC
         DC  ++  L       +    LV+EI  ++       F  +PR  N V+  LAK     S C
Subjt:  SDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAKRD-KLSKC

A0A2N9IZI1 Uncharacterized protein3.9e-1925.94Show/hide
Query:  FSWVSFLVGKAAVGLRQI-LLGRGSGFALHSGHEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIV--MLGSWVETGDILVDQAILSSDVEVIRKIPI
        F+W S L  +  + +  +  +G GS   +   H +     SH   I++ +          NLD N  V  ++ +  E    L++   +  + +VI+ IP+
Subjt:  FSWVSFLVGKAAVGLRQI-LLGRGSGFALHSGHEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIV--MLGSWVETGDILVDQAILSSDVEVIRKIPI

Query:  S-NHSEDKLVWHYDKLGRYTVKSGYKLFMKAKIDDKWFDISSKVSKEDLGLVAVTCWAIWMDRNKF-VHEDPIPPANIRSQWISEYLRSSFVEANSKAGN
        S  +  D+L+W+    G Y V+S Y L     +D   F              A+  WAIW  RN   V++D  PP  +  + +   L   F  AN+K   
Subjt:  S-NHSEDKLVWHYDKLGRYTVKSGYKLFMKAKIDDKWFDISSKVSKEDLGLVAVTCWAIWMDRNKF-VHEDPIPPANIRSQWISEYLRSSFVEANSKAGN

Query:  MHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVI
         H S  N +   +   W PPP   +K+N D     +    G+G++ RN  G  +   S            E +A    +  A  L  +++I E D  I+I
Subjt:  MHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVI

Query:  NFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLA
        N L  S    ++   ++E+   +A  L  V F    R+GN VA  LA
Subjt:  NFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLA

SwissProt top hitse value%identityAlignment
A6MM28 DNA-directed RNA polymerase subunit beta4.6e-1789.8Show/hide
Query:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV
        +EIQTHVTS  PE ITNEIPHLEA LLRNLDKNGIVMLGSWVETGDILV
Subjt:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV

P60282 DNA-directed RNA polymerase subunit beta1.6e-1787.76Show/hide
Query:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV
        +EIQTHVTSH PE ITNEIPHLEA LLRNLD+NGIVMLGSWVETGD+LV
Subjt:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV

Q09MI6 DNA-directed RNA polymerase subunit beta1.2e-1791.84Show/hide
Query:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV
        +EIQTHVTS  PE ITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV
Subjt:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV

Q09X25 DNA-directed RNA polymerase subunit beta2.0e-1789.8Show/hide
Query:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV
        +EI THVTSH PE ITNEIPHLEA LLRNLDKNGIVMLGSWVETGDILV
Subjt:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV

Q4VZP1 DNA-directed RNA polymerase subunit beta1.2e-1791.84Show/hide
Query:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV
        +EIQTHVTSH PE ITNEIPHLEARLL NLDKNGIVMLGSWVETGDILV
Subjt:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV

Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.9e-2030.65Show/hide
Query:  LVAVTCWAIWMDRNK--FVHEDPIPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLVCRNS
        LV    W +W  RN+  F  ++   P  +R         S+  E   KA             +LS  W  PP  + K N+DATW+   P  GIG + RN 
Subjt:  LVAVTCWAIWMDRNK--FVHEDPIPPANIRSQWISEYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLVCRNS

Query:  EGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAK
         G ++   +   P       AEL+A+   +         +II ESD Q ++N L+ S + W   +  +E+I  +     EVKF+F PR GN+VAD +A+
Subjt:  EGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAK

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-1132.84Show/hide
Query:  PPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEE
        P +D   I +DA WK    ++G G V RN          S + +V     AE  A+ + ++ AQ++G  K+ + SD Q +I  ++  S       G++ +
Subjt:  PPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEE

Query:  IWVVADGLREVKFQFVPRKGNRVADYLAKRDKLS
        I  ++ G  +V F FVPR  NRVAD LAK   +S
Subjt:  IWVVADGLREVKFQFVPRKGNRVADYLAKRDKLS

AT4G29090.1 Ribonuclease H-like superfamily protein3.0e-1633.58Show/hide
Query:  WSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGL
        W PPP  + K N+DATW       GIG V RN +G +    +   P +     AEL+A+   +        N +I ESD Q++I  L+ + E+W   +  
Subjt:  WSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGL

Query:  VEEIWVVADGLREVKFQFVPRKGNRVADYLAKRDKLS
        ++++  +     EVKF F+PR+GN +A+ +A R+ LS
Subjt:  VEEIWVVADGLREVKFQFVPRKGNRVADYLAKRDKLS

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.9e-1125.91Show/hide
Query:  WAIWMDRNKFVHEDPIPPANIRSQWISEYLRSSFVE-ANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEA
        W IW   N  V          + Q   E   +   E  ++   N  Q+   ++ PS +  WSPP  D  K N DA+  +     G+G + RNS+G +IE 
Subjt:  WAIWMDRNKFVHEDPIPPANIRSQWISEYLRSSFVE-ANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEA

Query:  SSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAKR
                  T  AE   ++  I+ +   G  K+I E D Q +   ++  S    + +  ++ I         ++F F  R+ N  AD+LAK+
Subjt:  SSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIESDCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAKR

ATCG00190.1 RNA polymerase subunit beta2.7e-1785.71Show/hide
Query:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV
        +EIQTHVT+  PE IT EIPHLE RLLRNLDKNGIVMLGSWVETGDILV
Subjt:  HEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVMLGSWVETGDILV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAGAATCGACTCCTGGACTGACATTCAATTGAGGGCTATATTAATCTCGGAAACAAGGGAAGAAAGGGAGGAAGAAATGAGATTCCTTATAGCCCTTTCCAGACC
TTATGTAATTTTCTTCAGTTGGGTTAGCTTTTTGGTAGGAAAGGCGGCAGTAGGGTTGCGTCAGATTTTGCTGGGACGTGGTAGTGGATTCGCCCTACACTCTGGTCACG
AGATCCAAACTCATGTGACAAGCCACGAACCTGAAATAATCACTAACGAAATACCACATTTAGAAGCCCGCTTACTCCGTAATTTAGACAAAAATGGAATTGTGATGCTG
GGATCGTGGGTGGAGACGGGCGATATTTTAGTAGATCAAGCTATTCTTAGCAGTGACGTGGAGGTTATTAGAAAGATTCCCATAAGTAATCATTCGGAAGATAAATTGGT
GTGGCATTATGATAAACTAGGGAGATATACGGTTAAGAGCGGGTACAAGCTTTTCATGAAAGCAAAAATTGATGACAAGTGGTTTGATATCAGCTCCAAAGTTTCGAAAG
AGGATCTAGGGCTTGTTGCGGTCACCTGTTGGGCAATTTGGATGGACAGAAACAAATTTGTTCATGAAGATCCTATTCCTCCAGCTAACATAAGAAGTCAATGGATATCA
GAGTACCTGAGGTCGTCCTTCGTTGAAGCAAATTCAAAAGCTGGAAACATGCATCAATCCTTCGTGAATCATTCCTTCCCTTCTTTGAGCGAAATTTGGTCTCCTCCTCC
AATCGATTTTTGGAAGATCAACTCTGATGCGACTTGGAAAGACCACCCCCCTGAGATGGGGATTGGTTTAGTTTGCAGAAATTCTGAAGGGGCCATTATTGAAGCCTCAA
GCTCGTTTTCCCCTTCGGTTCCAGAAACTCCCTGTGCTGAATTAAAAGCTATTTTGATGGGAATTAGAAGAGCTCAAACTTTGGGCTGTAATAAAATCATTATTGAATCT
GATTGTCAAATCGTGATTAATTTCCTGTCTAAATCATCCGAAGTCTGGAGCATTGCAGAAGGCCTTGTAGAAGAAATTTGGGTCGTGGCTGATGGGCTTAGGGAAGTTAA
ATTTCAATTTGTTCCAAGAAAAGGGAATAGAGTAGCTGATTATCTAGCTAAAAGAGATAAGTTGTCCAAATGTAGTGATTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAGAATCGACTCCTGGACTGACATTCAATTGAGGGCTATATTAATCTCGGAAACAAGGGAAGAAAGGGAGGAAGAAATGAGATTCCTTATAGCCCTTTCCAGACC
TTATGTAATTTTCTTCAGTTGGGTTAGCTTTTTGGTAGGAAAGGCGGCAGTAGGGTTGCGTCAGATTTTGCTGGGACGTGGTAGTGGATTCGCCCTACACTCTGGTCACG
AGATCCAAACTCATGTGACAAGCCACGAACCTGAAATAATCACTAACGAAATACCACATTTAGAAGCCCGCTTACTCCGTAATTTAGACAAAAATGGAATTGTGATGCTG
GGATCGTGGGTGGAGACGGGCGATATTTTAGTAGATCAAGCTATTCTTAGCAGTGACGTGGAGGTTATTAGAAAGATTCCCATAAGTAATCATTCGGAAGATAAATTGGT
GTGGCATTATGATAAACTAGGGAGATATACGGTTAAGAGCGGGTACAAGCTTTTCATGAAAGCAAAAATTGATGACAAGTGGTTTGATATCAGCTCCAAAGTTTCGAAAG
AGGATCTAGGGCTTGTTGCGGTCACCTGTTGGGCAATTTGGATGGACAGAAACAAATTTGTTCATGAAGATCCTATTCCTCCAGCTAACATAAGAAGTCAATGGATATCA
GAGTACCTGAGGTCGTCCTTCGTTGAAGCAAATTCAAAAGCTGGAAACATGCATCAATCCTTCGTGAATCATTCCTTCCCTTCTTTGAGCGAAATTTGGTCTCCTCCTCC
AATCGATTTTTGGAAGATCAACTCTGATGCGACTTGGAAAGACCACCCCCCTGAGATGGGGATTGGTTTAGTTTGCAGAAATTCTGAAGGGGCCATTATTGAAGCCTCAA
GCTCGTTTTCCCCTTCGGTTCCAGAAACTCCCTGTGCTGAATTAAAAGCTATTTTGATGGGAATTAGAAGAGCTCAAACTTTGGGCTGTAATAAAATCATTATTGAATCT
GATTGTCAAATCGTGATTAATTTCCTGTCTAAATCATCCGAAGTCTGGAGCATTGCAGAAGGCCTTGTAGAAGAAATTTGGGTCGTGGCTGATGGGCTTAGGGAAGTTAA
ATTTCAATTTGTTCCAAGAAAAGGGAATAGAGTAGCTGATTATCTAGCTAAAAGAGATAAGTTGTCCAAATGTAGTGATTTCTAG
Protein sequenceShow/hide protein sequence
MIRIDSWTDIQLRAILISETREEREEEMRFLIALSRPYVIFFSWVSFLVGKAAVGLRQILLGRGSGFALHSGHEIQTHVTSHEPEIITNEIPHLEARLLRNLDKNGIVML
GSWVETGDILVDQAILSSDVEVIRKIPISNHSEDKLVWHYDKLGRYTVKSGYKLFMKAKIDDKWFDISSKVSKEDLGLVAVTCWAIWMDRNKFVHEDPIPPANIRSQWIS
EYLRSSFVEANSKAGNMHQSFVNHSFPSLSEIWSPPPIDFWKINSDATWKDHPPEMGIGLVCRNSEGAIIEASSSFSPSVPETPCAELKAILMGIRRAQTLGCNKIIIES
DCQIVINFLSKSSEVWSIAEGLVEEIWVVADGLREVKFQFVPRKGNRVADYLAKRDKLSKCSDF