; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg006998 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg006998
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranscription factor DYT1
Genome locationscaffold10:39444213..39448399
RNA-Seq ExpressionSpg006998
SyntenySpg006998
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3948530.1 hypothetical protein CMV_025485 [Castanea mollissima]8.0e-0959.7Show/hide
Query:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN
        M Y GS  D L + ++ +    +  +R   D+ TEYKSKNLHAERRRRQKLSDRLL LRA VPIITN
Subjt:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN

XP_022146507.1 transcription factor DYT1, partial [Momordica charantia]6.7e-1679.03Show/hide
Query:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATV
        MA+ G +PDELRMIE++SG  SI GQRR TDES +YKSKNLHAERRRRQKLSDRLLLLRAT+
Subjt:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATV

XP_022930020.1 transcription factor DYT1 [Cucurbita moschata]2.7e-1779.1Show/hide
Query:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN
        MAYA S  D+LR  E+ +  RSIT +RRPTDES EYKSKNLHAERRRRQKLSDRLLLLRATVPIITN
Subjt:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN

XP_024200126.1 transcription factor DYT1 [Rosa chinensis]4.7e-0953.85Show/hide
Query:  LNDMAYAGSRPDELRMIEDDS----GGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITNATSQ
        LNDM + GS   EL   +       GGR + G+RR  ++ + +KSKNLHAERRRRQKL DRLL+LR+ VPIITN T +
Subjt:  LNDMAYAGSRPDELRMIEDDS----GGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITNATSQ

XP_030973145.1 transcription factor DYT1 [Quercus lobata]6.1e-0964.71Show/hide
Query:  MAYAGSRPDELRMIEDDSGGRSITGQRR-PTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN
        M Y GS  D L  I  +   R   G+RR   D+ TEYKSKNLHAERRRRQKLSDRLL LRA VPIITN
Subjt:  MAYAGSRPDELRMIEDDSGGRSITGQRR-PTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN

TrEMBL top hitse value%identityAlignment
A0A1Y0B6D2 Dysfunctional tapetum 19.5e-0860.87Show/hide
Query:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDE--STEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN
        M +A S  DEL + E+ +G     G+R  + E  +T YKSKNLHAERRRRQKLSDRLL LRA VPIITN
Subjt:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDE--STEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN

A0A2N9GEL9 BHLH domain-containing protein5.0e-0961.19Show/hide
Query:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN
        M Y GS  DEL + E+ S    +  QR   D+ TE+KSKNLHAER RRQKLS RLL LRA VPIITN
Subjt:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN

A0A6J1CZR8 transcription factor DYT13.3e-1679.03Show/hide
Query:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATV
        MA+ G +PDELRMIE++SG  SI GQRR TDES +YKSKNLHAERRRRQKLSDRLLLLRAT+
Subjt:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATV

A0A6J1EVV3 transcription factor DYT11.3e-1779.1Show/hide
Query:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN
        MAYA S  D+LR  E+ +  RSIT +RRPTDES EYKSKNLHAERRRRQKLSDRLLLLRATVPIITN
Subjt:  MAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN

A0A7N2LV27 BHLH domain-containing protein3.0e-0964.71Show/hide
Query:  MAYAGSRPDELRMIEDDSGGRSITGQRR-PTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN
        M Y GS  D L  I  +   R   G+RR   D+ TEYKSKNLHAERRRRQKLSDRLL LRA VPIITN
Subjt:  MAYAGSRPDELRMIEDDSGGRSITGQRR-PTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein7.5e-0558.97Show/hide
Query:  DESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITNAT
        +E   +KS NL AERRRR+KL  RL+ LR+ VPI+TN T
Subjt:  DESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITNAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCTAAGGCTGGAGATCCATGCTTGGCCTCGAGGCGCCCTAGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAATATCAAGGTGAATGGGGAAAGTGTTCA
TAGTAAGTGGGTGAAGGAAACGTGTCAAACGTATCCTGCGGTCTCCACCATTAGGTTGCACCGTGAGATTTCCATGCGCCGCCTGCGAGTCGCCCTTGGAGCGATCACCC
TACGGAGGGCTTGCACATGGGATTCGGAACAACGCAAACTCCAGAAATGGATAGGGTTTCCTAGGAGAAGAGGTTTCCGCCCCACCAAGAGAGACGATCAACATTATATA
CTCAACGACATGGCATACGCAGGCTCGCGACCAGACGAATTACGCATGATTGAAGATGATAGTGGCGGCAGATCGATAACCGGCCAACGACGACCCACCGATGAATCCAC
CGAATACAAATCCAAGAACCTCCATGCAGAGAGACGACGGAGGCAAAAGCTTAGCGATAGACTACTATTACTTCGTGCTACTGTTCCAATCATCACAAATGCAACCTCCC
AAAACTCTTCTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCTAAGGCTGGAGATCCATGCTTGGCCTCGAGGCGCCCTAGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAATATCAAGGTGAATGGGGAAAGTGTTCA
TAGTAAGTGGGTGAAGGAAACGTGTCAAACGTATCCTGCGGTCTCCACCATTAGGTTGCACCGTGAGATTTCCATGCGCCGCCTGCGAGTCGCCCTTGGAGCGATCACCC
TACGGAGGGCTTGCACATGGGATTCGGAACAACGCAAACTCCAGAAATGGATAGGGTTTCCTAGGAGAAGAGGTTTCCGCCCCACCAAGAGAGACGATCAACATTATATA
CTCAACGACATGGCATACGCAGGCTCGCGACCAGACGAATTACGCATGATTGAAGATGATAGTGGCGGCAGATCGATAACCGGCCAACGACGACCCACCGATGAATCCAC
CGAATACAAATCCAAGAACCTCCATGCAGAGAGACGACGGAGGCAAAAGCTTAGCGATAGACTACTATTACTTCGTGCTACTGTTCCAATCATCACAAATGCAACCTCCC
AAAACTCTTCTGATTAA
Protein sequenceShow/hide protein sequence
MLSKAGDPCLASRRPRSVPLRMVFAWVNIKVNGESVHSKWVKETCQTYPAVSTIRLHREISMRRLRVALGAITLRRACTWDSEQRKLQKWIGFPRRRGFRPTKRDDQHYI
LNDMAYAGSRPDELRMIEDDSGGRSITGQRRPTDESTEYKSKNLHAERRRRQKLSDRLLLLRATVPIITNATSQNSSD