; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg007031 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007031
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionHigh mobility group B protein 2
Genome locationscaffold9:47624112..47626320
RNA-Seq ExpressionSpg007031
SyntenySpg007031
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591217.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.3e-5085.23Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KLAVKKGAANAGKKG KKA KDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               A+KAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEK MKAYNKKQASGANAAEEDESEKS+SEVNDDEEGDEGSEEEDDDE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

XP_022142588.1 HMG1/2-like protein [Momordica charantia]3.0e-5085.23Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKADAKL+VKKGAA AG   GKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDE+GDEGSEEE+DDE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

XP_022936925.1 HMG1/2-like protein [Cucurbita moschata]1.3e-5085.23Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KLAVKKGAANAGKKG KKA KDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               A+KAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEK MKAYNKKQASGANAAEEDESEKS+SEVNDDEEGDEGSEEEDDDE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

XP_022975791.1 HMG1/2-like protein [Cucurbita maxima]3.0e-5084.56Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KLAVKKGAANAGKKG KKA KDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               A+KAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEK MKAYNKKQASGANAAEEDESEKS+SEVNDDEEGDEGSEEEDDD+
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

XP_038896795.1 HMG1/2-like protein isoform X1 [Benincasa hispida]2.4e-5286.58Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKS+SKKADAKLAVKKGAANAGKKG KKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRK+
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEKNMKAYNKKQASGANA EEDESEKSMSEVNDDE+GDEGSEEEDDDE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

TrEMBL top hitse value%identityAlignment
A0A1S3BW96 HMG1/2-like protein2.5e-5085.91Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KLAVKKGA  AGKKG KKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEKNMKAYNKKQASGANAA+EDESEKSMSEVNDDE+GDEGSEEEDDDE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

A0A5A7VCD7 HMG1/2-like protein2.0e-4480.54Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKS         KLAVKKGA  AGKKG KKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEKNMKAYNKKQASGANAA+EDESEKSMSEVNDDE+GDEGSEEEDDDE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

A0A6J1CNM1 HMG1/2-like protein1.4e-5085.23Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKADAKL+VKKGAA AG   GKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               AEKAPYIAKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDE+GDEGSEEE+DDE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

A0A6J1FF34 HMG1/2-like protein6.5e-5185.23Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KLAVKKGAANAGKKG KKA KDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               A+KAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEK MKAYNKKQASGANAAEEDESEKS+SEVNDDEEGDEGSEEEDDDE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

A0A6J1IF57 HMG1/2-like protein1.4e-5084.56Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV
        MKGGKSKSESKKAD KLAVKKGAANAGKKG KKA KDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS               A+KAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEK MKAYNKKQASGANAAEEDESEKS+SEVNDDEEGDEGSEEEDDD+
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

SwissProt top hitse value%identityAlignment
O49596 High mobility group B protein 27.4e-2857.33Show/hide
Query:  MKGGKSKSESKKADAKLAV-KKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRK
        MKG KSK+E++   +KL+V KK A  AG+  GK A KDPNKPKRPASAFFVFME+FR+ F +ENP NK+V+               +EKAPY+AKA+KRK
Subjt:  MKGGKSKSESKKADAKLAV-KKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRK

Query:  VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        VEYEKN+KAYNKK   G    E++ES+KS+SEVND+++ ++GSEEE+DD+
Subjt:  VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

P26585 HMG1/2-like protein5.7e-3665.13Show/hide
Query:  MKGGKSKSESKKADAKLAV-KKGAANAGKK--GGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADK
        MKGGKSK+ESK+AD KLAV KKGAA   +K  G  KA KDPNKPKRP SAFFVFMEEFRK FN+E+P NKAVS               AEKAPY+AK++K
Subjt:  MKGGKSKSESKKADAKLAV-KKGAANAGKK--GGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADK

Query:  RKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        RKVEYEKNM+AYNKKQA G    +E+ESEKS+SEVND+++ +EGS EE+DD+
Subjt:  RKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

P27347 DNA-binding protein MNB1B3.8e-2454.43Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGK-KAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRK
        MKG KSK  + KADAKLAVK   A    KG K KAGKDPNKPKR  SAFFVFMEEFRK+F E+NP NK+V+A               +KAPY+AKA+K K
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGK-KAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRK

Query:  VEYEKNMKAYNKKQASGANAA--------EEDESEKSMSEVNDDEEGDEGSEEEDDDE
        +EY K + AYNK +++ A  A        +E+ES+KS SEVN DE+ +EGSEE++DD+
Subjt:  VEYEKNMKAYNKKQASGANAA--------EEDESEKSMSEVNDDEEGDEGSEEEDDDE

P40619 HMG1/2-like protein3.9e-2960.4Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAV---------------SAEKAPYIAKADKRKV
        MKGGKSK+   K+D KLAVKK AA+  K   KKA KDPNKPKRP SAFFVFME+FRK + E++PNNK+V               +AEKAP+I+KA+KRK 
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAV---------------SAEKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEKN++AYNKKQA+G  AAEE+ES+KS SEVNDD+E  +GS E+D ++
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

P93047 High mobility group B protein 31.7e-2757.05Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV
        MKG KSK+E++    KL+V K  A    KG K A KDPNKPKRP+SAFFVFME+FR  + EE+P NK+V+A               EKAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEKNMKAYNKK   G    E++ES+KS+SEVND+++ ++GSEEE+DD+
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

Arabidopsis top hitse value%identityAlignment
AT1G20693.1 high mobility group B25.3e-2957.33Show/hide
Query:  MKGGKSKSESKKADAKLAV-KKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRK
        MKG KSK+E++   +KL+V KK A  AG+  GK A KDPNKPKRPASAFFVFME+FR+ F +ENP NK+V+               +EKAPY+AKA+KRK
Subjt:  MKGGKSKSESKKADAKLAV-KKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRK

Query:  VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        VEYEKN+KAYNKK   G    E++ES+KS+SEVND+++ ++GSEEE+DD+
Subjt:  VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

AT1G20693.2 high mobility group B26.9e-2957.43Show/hide
Query:  MKGGKSKSESKKADAKLAV-KKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRK
        MKG KSK+E++   +KL+V KK A  AG+  GK A KDPNKPKRPASAFFVFME+FR+ F +ENP NK+V+               +EKAPY+AKA+KRK
Subjt:  MKGGKSKSESKKADAKLAV-KKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRK

Query:  VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDD
        VEYEKN+KAYNKK   G    E++ES+KS+SEVND+++ ++GSEE+DD
Subjt:  VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDD

AT1G20693.3 high mobility group B21.4e-2958.39Show/hide
Query:  MKGGKSKSESKKADAKLAV-KKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRK
        MKG KSK+E++   +KL+V KK A  AG+  GK A KDPNKPKRPASAFFVFME+FR+ F +ENP NK+V+               +EKAPY+AKA+KRK
Subjt:  MKGGKSKSESKKADAKLAV-KKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVS---------------AEKAPYIAKADKRK

Query:  VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDD
        VEYEKN+KAYNKK   G    E++ES+KS+SEVND+++ ++GSEEEDDD
Subjt:  VEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDD

AT1G20696.1 high mobility group B31.2e-2857.05Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV
        MKG KSK+E++    KL+V K  A    KG K A KDPNKPKRP+SAFFVFME+FR  + EE+P NK+V+A               EKAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE
        EYEKNMKAYNKK   G    E++ES+KS+SEVND+++ ++GSEEE+DD+
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEEEDDDE

AT1G20696.3 high mobility group B37.6e-2856.94Show/hide
Query:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV
        MKG KSK+E++    KL+V K  A    KG K A KDPNKPKRP+SAFFVFME+FR  + EE+P NK+V+A               EKAPY+AKADKRKV
Subjt:  MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSA---------------EKAPYIAKADKRKV

Query:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEE
        EYEKNMKAYNKK   G    E++ES+KS+SEVND+++ ++GSEE
Subjt:  EYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEEGDEGSEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACGCGAAGCTTGCTGTGAAGAAAGGTGCAGCGAACGCGGGCAAAAAAGGGGGTAAGAAGGCAGGGAAAGA
TCCTAACAAACCCAAGAGGCCAGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGAAAAAG
CACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCGGAAGAAGATGAATCT
GAGAAGTCAATGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGAGGATGATGACGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGCGGTAAATCGAAGTCGGAGTCGAAGAAAGCAGACGCGAAGCTTGCTGTGAAGAAAGGTGCAGCGAACGCGGGCAAAAAAGGGGGTAAGAAGGCAGGGAAAGA
TCCTAACAAACCCAAGAGGCCAGCCAGTGCCTTCTTCGTTTTCATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAATAACAAAGCAGTGTCTGCTGAAAAAG
CACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAGAAAAATATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCGGAAGAAGATGAATCT
GAGAAGTCAATGTCTGAGGTGAATGATGATGAGGAAGGAGATGAGGGCAGCGAAGAGGAGGATGATGACGAGTGA
Protein sequenceShow/hide protein sequence
MKGGKSKSESKKADAKLAVKKGAANAGKKGGKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDES
EKSMSEVNDDEEGDEGSEEEDDDE