CuGenDBv2

Gene ID	Spg007043
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	scaffold9:48109485..48113134
RNA-Seq Expression	Spg007043
Synteny	Spg007043
Gene Ontology terms	NA
InterPro domains	IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN65484.1 hypothetical protein VITISV_029474 [Vitis vinifera]

2.2e-37

28.14

Show/hide

Query:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL
        ++ GLG  KI  +N ALL KWLWR+ RE  +L  ++I S +G      D ++  +W S   PW+ IA +   +S   +F +G GD+  FWDD W  ++PL
Subjt:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL

Query:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS
           +P + R+    +A +  +L      +W+    R L D E+ + + +   L+R  +  S  D   W L  SG++TVKS   AL   S    +   +F 
Subjt:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS

Query:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD
          +W    P +VK F+W +AH+ +NT D++Q     K                             +W+R   S  ++      +   L+    G G   
Subjt:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD

Query:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW
        +  VLW N   AI+W +W+ERN+ +F +K+ + +   D +    S W+   ++F      M+ L W
Subjt:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW

CAN65484.1 hypothetical protein VITISV_029474 [Vitis vinifera]

7.4e-14

44.09

Show/hide

Query:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVT
        GAS  IL++W  K++   EVV G +S+S+ F        W++ VYGP+    R  FW EL D+ GL S  WC+GGDFNV+R   EK    R T
Subjt:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVT

CAN65484.1 hypothetical protein VITISV_029474 [Vitis vinifera]

8.2e-37

29.66

Show/hide

Query:  KRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLK
        K GLG+  I  +NSALL KWLWR+ RE  +L  ++I S +G      D+++  +W S   PW+ IA +   +S   +F +G GD+  FW+D W  D+ L 
Subjt:  KRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLK

Query:  TFFPGMYRLSSARMVKVLELWEGST----WDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS
          FP + R+   + + +  +  GST    W+    R L D E+ E + +   L+   L  S  D   W L  SG++TVKS   AL  +S    V   +  
Subjt:  TFFPGMYRLSSARMVKVLELWEGST----WDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS

Query:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD
          +W    P ++KFF+W +AH+ +NT DM+Q     K                             +W+R      I+      V   ++    G G   
Subjt:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD

Query:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIF
        +  VLW     AI+W +W+ERN+ +F +KS + +   D++   AS W +  ++F
Subjt:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIF

RVW27524.1 putative ribonuclease H protein [Vitis vinifera]

1.1e-17

44.04

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Query:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVTKRGLGID
        GAS  ILV+W  K++ + EVV G +S+SV F      QFW++ VYGP+    R  FW EL D+ GL S  WC+GGDFNV+R   EK   GR+T     +D
Subjt:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVTKRGLGID

Query:  KIRGKNSAL
            +N  +
Subjt:  KIRGKNSAL

RVW27524.1 putative ribonuclease H protein [Vitis vinifera]

1.4e-36

27.6

Show/hide

Query:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL
        ++ GLG  KI  +N ALL KWLWR+ RE  +L  ++I S +G      D ++  +W S   PW+ IA +   +S   +F +G GD+  FWDD W  ++PL
Subjt:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL

Query:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS
           +P + R+    +A +  +L      +W+    R L D E+ + + +    +R  +  S  D   W L  SG++TVKS   AL   S    +   +F 
Subjt:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS

Query:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD
          +W    P +VK F+W +AH+ +NT D++Q     K                             +W+R   S  ++      +   L     G G   
Subjt:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD

Query:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW
        +  VLW N   A++W +W+ERN+ +F +K+ + +   D +    S W+   ++F      M+ L W
Subjt:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW

RVW70235.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]

2.4e-36

27.6

Show/hide

Query:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL
        ++ GLG  KI  +N ALL KWLWR+ RE  +L  ++I S +G      D ++  +W S   PW+ IA +   +S   +F +G GD+  FWDD W  ++PL
Subjt:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL

Query:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS
           +P + R+    +A +  +L      +W+    R L D E+ + + +    +R  +  S  D   W L  SG++TVKS   AL   S    +   +F 
Subjt:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS

Query:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD
          +W    P +VK F+W +AH+ +NT D++Q     K                             +W+R   S  ++      +   L     G G   
Subjt:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD

Query:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW
        +  VLW N   A++W +W+ERN+ +F +K+ + +   D +    S W+   ++F      M+ L W
Subjt:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW

RVW70235.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]

2.2e-13

41.94

Show/hide

Query:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVT
        GAS  IL++W  K++   EV+ G +S+S+ F        W++ VYGP+    R   W EL D+ GL S  WC+GGDFNV+R   EK    R+T
Subjt:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVT

RVW74148.1 putative ribonuclease H protein [Vitis vinifera]

2.4e-36

29.34

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Query:  KRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLK
        K GLG+  I  +NSALL KWLWR+ RE  +L  ++I S +G      D+++  +W S   PW  IA +   +S   +F +G GD+  FW+D W  D+ L 
Subjt:  KRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLK

Query:  TFFPGMYRLSSARMVKVLELWEGST----WDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKSALESLSSRRRVLEERFSSQI
          FP + R    + + +  +  GST    W+    R L D E+ E + +   L+   L  S  D   W L  SG++TVKS   +LS    +     +  +
Subjt:  TFFPGMYRLSSARMVKVLELWEGST----WDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKSALESLSSRRRVLEERFSSQI

Query:  WEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKDKAK
        W    P ++KFF+W +AH+ +NT DM+Q     K                             +W+R      I+      V   ++    G G   +  
Subjt:  WEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKDKAK

Query:  VLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIF
        VLW     AI+W +W+ERN+ +F +KS + +   D++   AS W +  ++F
Subjt:  VLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIF

TrEMBL top hits

e value

%identity

Alignment

A0A438CWE0 Putative ribonuclease H protein

5.4e-18

44.04

Show/hide

Query:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVTKRGLGID
        GAS  ILV+W  K++ + EVV G +S+SV F      QFW++ VYGP+    R  FW EL D+ GL S  WC+GGDFNV+R   EK   GR+T     +D
Subjt:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVTKRGLGID

Query:  KIRGKNSAL
            +N  +
Subjt:  KIRGKNSAL

A0A438CWE0 Putative ribonuclease H protein

6.7e-37

27.6

Show/hide

Query:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL
        ++ GLG  KI  +N ALL KWLWR+ RE  +L  ++I S +G      D ++  +W S   PW+ IA +   +S   +F +G GD+  FWDD W  ++PL
Subjt:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL

Query:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS
           +P + R+    +A +  +L      +W+    R L D E+ + + +    +R  +  S  D   W L  SG++TVKS   AL   S    +   +F 
Subjt:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS

Query:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD
          +W    P +VK F+W +AH+ +NT D++Q     K                             +W+R   S  ++      +   L     G G   
Subjt:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD

Query:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW
        +  VLW N   A++W +W+ERN+ +F +K+ + +   D +    S W+   ++F      M+ L W
Subjt:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW

A0A438GDE7 LINE-1 retrotransposable element ORF2 protein

1.2e-36

27.6

Show/hide

Query:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL
        ++ GLG  KI  +N ALL KWLWR+ RE  +L  ++I S +G      D ++  +W S   PW+ IA +   +S   +F +G GD+  FWDD W  ++PL
Subjt:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL

Query:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS
           +P + R+    +A +  +L      +W+    R L D E+ + + +    +R  +  S  D   W L  SG++TVKS   AL   S    +   +F 
Subjt:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS

Query:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD
          +W    P +VK F+W +AH+ +NT D++Q     K                             +W+R   S  ++      +   L     G G   
Subjt:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD

Query:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW
        +  VLW N   A++W +W+ERN+ +F +K+ + +   D +    S W+   ++F      M+ L W
Subjt:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW

A0A438GDE7 LINE-1 retrotransposable element ORF2 protein

1.0e-13

41.94

Show/hide

Query:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVT
        GAS  IL++W  K++   EV+ G +S+S+ F        W++ VYGP+    R   W EL D+ GL S  WC+GGDFNV+R   EK    R+T
Subjt:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVT

A0A438GDE7 LINE-1 retrotransposable element ORF2 protein

1.2e-36

29.34

Show/hide

Query:  KRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLK
        K GLG+  I  +NSALL KWLWR+ RE  +L  ++I S +G      D+++  +W S   PW  IA +   +S   +F +G GD+  FW+D W  D+ L 
Subjt:  KRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLK

Query:  TFFPGMYRLSSARMVKVLELWEGST----WDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKSALESLSSRRRVLEERFSSQI
          FP + R    + + +  +  GST    W+    R L D E+ E + +   L+   L  S  D   W L  SG++TVKS   +LS    +     +  +
Subjt:  TFFPGMYRLSSARMVKVLELWEGST----WDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKSALESLSSRRRVLEERFSSQI

Query:  WEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKDKAK
        W    P ++KFF+W +AH+ +NT DM+Q     K                             +W+R      I+      V   ++    G G   +  
Subjt:  WEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKDKAK

Query:  VLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIF
        VLW     AI+W +W+ERN+ +F +KS + +   D++   AS W +  ++F
Subjt:  VLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIF

A5BCI7 Reverse transcriptase domain-containing protein

1.0e-37

28.14

Show/hide

Query:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL
        ++ GLG  KI  +N ALL KWLWR+ RE  +L  ++I S +G      D ++  +W S   PW+ IA +   +S   +F +G GD+  FWDD W  ++PL
Subjt:  TKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPL

Query:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS
           +P + R+    +A +  +L      +W+    R L D E+ + + +   L+R  +  S  D   W L  SG++TVKS   AL   S    +   +F 
Subjt:  KTFFPGMYRL---SSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS

Query:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD
          +W    P +VK F+W +AH+ +NT D++Q     K                             +W+R   S  ++      +   L+    G G   
Subjt:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD

Query:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW
        +  VLW N   AI+W +W+ERN+ +F +K+ + +   D +    S W+   ++F      M+ L W
Subjt:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQW

A5BCI7 Reverse transcriptase domain-containing protein

3.6e-14

44.09

Show/hide

Query:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVT
        GAS  IL++W  K++   EVV G +S+S+ F        W++ VYGP+    R  FW EL D+ GL S  WC+GGDFNV+R   EK    R T
Subjt:  GASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWVTGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVT

A5BCI7 Reverse transcriptase domain-containing protein

4.0e-37

29.66

Show/hide

Query:  KRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLK
        K GLG+  I  +NSALL KWLWR+ RE  +L  ++I S +G      D+++  +W S   PW+ IA +   +S   +F +G GD+  FW+D W  D+ L 
Subjt:  KRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIR-DSSSFKKWKSFASPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLK

Query:  TFFPGMYRLSSARMVKVLELWEGST----WDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS
          FP + R+   + + +  +  GST    W+    R L D E+ E + +   L+   L  S  D   W L  SG++TVKS   AL  +S    V   +  
Subjt:  TFFPGMYRLSSARMVKVLELWEGST----WDIGLGRALFDREMNEWDEMSALLERCQLGDS-EDVVFWKLEDSGVYTVKS---ALESLSSRRRVLEERFS

Query:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD
          +W    P ++KFF+W +AH+ +NT DM+Q     K                             +W+R      I+      V   ++    G G   
Subjt:  SQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAK-----------------------------VWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKD

Query:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIF
        +  VLW     AI+W +W+ERN+ +F +KS + +   D++   AS W +  ++F
Subjt:  KAKVLWSNFSRAIVWHLWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIF

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

3.0e-18

27.55

Show/hide

Query:  GLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIRDSSSFKKWKSFASPWRDIA-SLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLKTF
        GLG+   +  N AL+ K  WR  +E +SL   +++ K+    IRDS       S++S WR IA  L    S    +  G G +  FW D W+S +PL   
Subjt:  GLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIRDSSSFKKWKSFASPWRDIA-SLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLKTF

Query:  FPGMYRLSSARMVKVLELW-EGSTWDIGLGRALFD--REMNEWDEMSALLERCQLGDSEDVVFWKLEDSGVYTVKSALESLSSRR--RVLEERFSSQIWE
          G  R +    V   +LW  G  WD     A  D     N   E+ A++     G + D + WK    G ++V+SA E L+     R     F + +W+
Subjt:  FPGMYRLSSARMVKVLELW-EGSTWDIGLGRALFD--REMNEWDEMSALLERCQLGDSEDVVFWKLEDSGVYTVKSALESLSSRR--RVLEERFSSQIWE

Query:  GTSPKRVKFFIWTLAHQSINT------------------------MDMVQKEFAAK--VWNRFVDSFGIEGCKLNCVVSWLNEVL-EGGGLKDKAKVLWS
           P+RVK F+W + +Q++ T                        M  V ++  A+  +W R V     +G     +  WL + L +  G +D   + WS
Subjt:  GTSPKRVKFFIWTLAHQSINT------------------------MDMVQKEFAAK--VWNRFVDSFGIEGCKLNCVVSWLNEVL-EGGGLKDKAKVLWS

Query:  NFSRAIVWHLWKERNSWVFTEKS
             I+W  WK R   +F E +
Subjt:  NFSRAIVWHLWKERNSWVFTEKS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTCTCCATTGCCACAGGAACCTTCCTTTCTTGCGAAAAGGAGGGTGAAGAAGGAACTCCTCGATAATTTCCTTGTAGTTCCTATATCTAGCAAGGTTGAAACCAAAAC
TCCTCGAAAAAATAATTCCAAACAGTTTGGGCTAAACCACAACTCCAAAAGATATGATCAACAAGGCAGACCAATCAACATATCTGTTAACTCGGAGGGAGCGTCGGACG
ACATTTTAGTGCTGTGGAAAGAGAAGGAAGTCAAAGCCTTGGAGGTGGTATCGGGTATTTACTCGCTGTCTGTTTTGTTTGAATGTGGGAATCAAAATCAGTTTTGGGTG
ACTGGAGTTTATGGGCCTAGCCGTCCTAAGGGTAGAAATTTTTTTTGGAGGGAGCTTTATGACCTCTGTGGGTTGTGCAGTGGAGTTTGGTGCATTGGAGGGGACTTCAA
TGTGGTGAGAAGTATTGAAGAAAAATCTTTCAGAGGTAGAGTTACTAAAAGAGGGCTAGGTATTGATAAAATTAGAGGTAAAAATTCGGCCCTCCTTATGAAATGGCTTT
GGAGATTTGAAAGAGAACCAGATTCGTTGGGGAGGAGAATTATTAAAAGTAAGTTCGGGGAAGACTTCATTCGGGATAGTTCCAGCTTCAAGAAATGGAAGTCATTTGCT
AGCCCTTGGAGGGATATTGCTAGCCTTGCTGTGTTCTACAGTAGCAATAGAAAATTCAAGATTGGCAGGGGGGATAAAGCTATGTTCTGGGACGATGCTTGGCTCTCTGA
TAGGCCGCTAAAAACGTTTTTTCCTGGGATGTATAGGCTGTCTTCGGCTAGAATGGTTAAAGTTTTAGAGCTGTGGGAGGGGTCCACGTGGGACATTGGGTTGGGAAGGG
CGCTTTTCGATAGGGAGATGAATGAATGGGATGAGATGTCTGCTCTTCTTGAACGATGCCAGTTGGGTGACAGTGAGGATGTTGTGTTTTGGAAGCTTGAAGATTCGGGA
GTTTACACAGTTAAATCTGCCCTTGAGTCCCTTTCTTCGAGAAGGAGAGTGTTGGAAGAAAGATTTAGCTCGCAAATATGGGAGGGAACTAGCCCCAAAAGGGTGAAATT
CTTTATTTGGACCCTTGCCCATCAAAGCATCAATACAATGGATATGGTGCAAAAAGAGTTTGCTGCAAAAGTTTGGAATCGGTTCGTTGATAGCTTTGGGATTGAGGGTT
GTAAACTCAATTGTGTGGTTAGTTGGTTGAATGAAGTCTTGGAGGGAGGTGGTTTAAAGGACAAAGCTAAAGTTCTTTGGAGCAATTTCTCAAGGGCTATTGTGTGGCAC
CTTTGGAAAGAAAGAAATTCATGGGTTTTTACTGAGAAATCGCTTTCGTTTGATATTTTTTGTGATGTTGTACAACAATCGGCCTCTAATTGGAGTGCCCTTGATAGAAT
TTTTTGTAATTATTCGCCTACCATGATTATGCTTCAATGGAAGTCTTTTGTGTAG

mRNA sequence

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Protein sequence

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MSPLPQEPSFLAKRRVKKELLDNFLVVPISSKVETKTPRKNNSKQFGLNHNSKRYDQQGRPINISVNSEGASDDILVLWKEKEVKALEVVSGIYSLSVLFECGNQNQFWV
TGVYGPSRPKGRNFFWRELYDLCGLCSGVWCIGGDFNVVRSIEEKSFRGRVTKRGLGIDKIRGKNSALLMKWLWRFEREPDSLGRRIIKSKFGEDFIRDSSSFKKWKSFA
SPWRDIASLAVFYSSNRKFKIGRGDKAMFWDDAWLSDRPLKTFFPGMYRLSSARMVKVLELWEGSTWDIGLGRALFDREMNEWDEMSALLERCQLGDSEDVVFWKLEDSG
VYTVKSALESLSSRRRVLEERFSSQIWEGTSPKRVKFFIWTLAHQSINTMDMVQKEFAAKVWNRFVDSFGIEGCKLNCVVSWLNEVLEGGGLKDKAKVLWSNFSRAIVWH
LWKERNSWVFTEKSLSFDIFCDVVQQSASNWSALDRIFCNYSPTMIMLQWKSFV

Spg007043 (gene) of Sponge gourd (cylindrica) v1 genome