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Spg007062 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007062
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold9:48004269..48015087
RNA-Seq ExpressionSpg007062
SyntenySpg007062
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055407.1 uncharacterized protein E6C27_scaffold80G002530 [Cucumis melo var. makuwa]2.4e-2955.97Show/hide
Query:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG
        MSS     K   +RLVE+EEQ+LYL EVPD+IRF+ESRL EI+ K D +D VAGRV+G+ IQEL+ RV+ LE    R GS+ERGDS +GS A +EE V  
Subjt:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG

Query:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEID
        LD+SQK +++M+ D+S+D +A LDV   G C ID
Subjt:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEID

KAA0066437.1 uncharacterized protein E6C27_scaffold21G005300 [Cucumis melo var. makuwa]2.0e-2857.48Show/hide
Query:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG
        MSST   SK   +RLVE+EEQ+LYL EVPD+IRF+ESRL EI+ K + +DAVAG V+G+PIQEL+ RV+ LE    R  +YE GDS SG  A MEE V+ 
Subjt:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG

Query:  LDSSQKAIVQMVTDLSDDVKAALDVNR
        LDSSQK +++M+ D+S+D +A L+V R
Subjt:  LDSSQKAIVQMVTDLSDDVKAALDVNR

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]1.4e-2954.14Show/hide
Query:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG
        MS+TKQLSK+HV+RLVEIEEQLLYLREVPD +R +E+R+ E S K  ++DAV  R+DG+PIQ++ MRVE LESKATRPGS+ERGDS +     +E  +  
Subjt:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG

Query:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI
        L++S  A++Q+  ++++D K  +D  R    EI
Subjt:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]5.3e-2953.38Show/hide
Query:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG
        MS+TKQLSK+HV+RLVEIEEQLLYLREVPD++R +E+R+ E S K  ++DAV  RVDG+PIQ++ MRVE  ESKATRPGS+ERGDS +     +E  +  
Subjt:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG

Query:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI
        L++S   ++Q+  ++++D K  +D  R    EI
Subjt:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]1.2e-3349.43Show/hide
Query:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG
        MS+TKQL K+H++RLVEIEE+LL+LRE+PD +R+VESRL EISTKAD +D V  R+DG+ I+ELM+RVE LE K  R  + ERG+S S S A MEE V+ 
Subjt:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG

Query:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI--DPLCHRQSETELADLLVGERYLTTWYQSTFTLGRLGKMT
        +D S+K IVQMV++L+DD KA +D  R    E+   P C  +    L + +     L  ++++T T+    K+T
Subjt:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI--DPLCHRQSETELADLLVGERYLTTWYQSTFTLGRLGKMT

TrEMBL top hitse value%identityAlignment
A0A5A7ULF5 Retrotrans_gag domain-containing protein1.1e-2955.97Show/hide
Query:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG
        MSS     K   +RLVE+EEQ+LYL EVPD+IRF+ESRL EI+ K D +D VAGRV+G+ IQEL+ RV+ LE    R GS+ERGDS +GS A +EE V  
Subjt:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG

Query:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEID
        LD+SQK +++M+ D+S+D +A LDV   G C ID
Subjt:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEID

A0A5A7VH68 Uncharacterized protein9.7e-2957.48Show/hide
Query:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG
        MSST   SK   +RLVE+EEQ+LYL EVPD+IRF+ESRL EI+ K + +DAVAG V+G+PIQEL+ RV+ LE    R  +YE GDS SG  A MEE V+ 
Subjt:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG

Query:  LDSSQKAIVQMVTDLSDDVKAALDVNR
        LDSSQK +++M+ D+S+D +A L+V R
Subjt:  LDSSQKAIVQMVTDLSDDVKAALDVNR

A0A6J1D906 Reverse transcriptase6.7e-3054.14Show/hide
Query:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG
        MS+TKQLSK+HV+RLVEIEEQLLYLREVPD +R +E+R+ E S K  ++DAV  R+DG+PIQ++ MRVE LESKATRPGS+ERGDS +     +E  +  
Subjt:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG

Query:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI
        L++S  A++Q+  ++++D K  +D  R    EI
Subjt:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI

A0A6J1DK29 uncharacterized protein LOC1110218292.5e-2953.38Show/hide
Query:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG
        MS+TKQLSK+HV+RLVEIEEQLLYLREVPD++R +E+R+ E S K  ++DAV  RVDG+PIQ++ MRVE  ESKATRPGS+ERGDS +     +E  +  
Subjt:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG

Query:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI
        L++S   ++Q+  ++++D K  +D  R    EI
Subjt:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI

A0A6J1DLQ6 uncharacterized protein LOC1110223205.9e-3449.43Show/hide
Query:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG
        MS+TKQL K+H++RLVEIEE+LL+LRE+PD +R+VESRL EISTKAD +D V  R+DG+ I+ELM+RVE LE K  R  + ERG+S S S A MEE V+ 
Subjt:  MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDG

Query:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI--DPLCHRQSETELADLLVGERYLTTWYQSTFTLGRLGKMT
        +D S+K IVQMV++L+DD KA +D  R    E+   P C  +    L + +     L  ++++T T+    K+T
Subjt:  LDSSQKAIVQMVTDLSDDVKAALDVNRGGGCEI--DPLCHRQSETELADLLVGERYLTTWYQSTFTLGRLGKMT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCGACCAAGCAGTTGTCGAAAACCCATGTGGAACGTTTAGTAGAGATCGAAGAGCAGTTACTCTACTTGAGGGAAGTCCCTGATGCTATTCGGTTCGTGGAATC
TCGGCTGGCTGAGATTTCGACTAAAGCCGACAAAGTTGATGCGGTAGCTGGCCGCGTGGATGGGATGCCCATCCAAGAATTGATGATGAGGGTTGAGAACCTTGAAAGTA
AAGCCACCCGACCTGGTAGCTACGAGCGTGGTGATAGCTTGTCGGGCTCTGCTGCCCTGATGGAGGAGCATGTCGATGGCTTAGACAGCTCCCAGAAAGCGATAGTCCAG
ATGGTTACGGACTTATCAGACGATGTGAAAGCTGCCCTCGACGTGAACAGGGGTGGAGGTTGCGAGATAGACCCTTTGTGCCACCGGCAATCCGAAACCGAGTTGGCTGA
CTTACTCGTGGGCGAGAGATACCTCACAACTTGGTATCAGAGCACGTTCACCCTGGGAAGGTTAGGAAAAATGACACAGAAAATGATTGAGGTGCAGCTCGATGTGACGG
ACCCTGATCTCGAAGGAATCGAGAAAGAAATGCATAAGTTACCTGCGATAGAAAGGAACCCGACGAAGCTTTCACATACTTCTGAGGAGACGGTCAAGGCCTTGGCGACG
ATTGCAAGTGAAATGGTCCATTGGCGAACGAAACCGTCGTCTTCTGACGTCACGGAGGCATTGGGTTCGAAAGGAAAGGAAAGAGAAGGCAGTGCGATGAAGGAAACGGA
AAACCAAGGCGTTGACGCATCTCCTTCGAGCACGTTCACCCTGGGAAGGTTAGGAAAAATGACACAGAAAAGGATTGAGGTGCGGCTCAATGTGACGGACACTGAGCTCG
AAGGAATCGAGAAAGAAATGCATAAGTTACCTGCGATCGAAAGGAACCCGCGCGAAGCTTTCGCAAACTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTCGACCAAGCAGTTGTCGAAAACCCATGTGGAACGTTTAGTAGAGATCGAAGAGCAGTTACTCTACTTGAGGGAAGTCCCTGATGCTATTCGGTTCGTGGAATC
TCGGCTGGCTGAGATTTCGACTAAAGCCGACAAAGTTGATGCGGTAGCTGGCCGCGTGGATGGGATGCCCATCCAAGAATTGATGATGAGGGTTGAGAACCTTGAAAGTA
AAGCCACCCGACCTGGTAGCTACGAGCGTGGTGATAGCTTGTCGGGCTCTGCTGCCCTGATGGAGGAGCATGTCGATGGCTTAGACAGCTCCCAGAAAGCGATAGTCCAG
ATGGTTACGGACTTATCAGACGATGTGAAAGCTGCCCTCGACGTGAACAGGGGTGGAGGTTGCGAGATAGACCCTTTGTGCCACCGGCAATCCGAAACCGAGTTGGCTGA
CTTACTCGTGGGCGAGAGATACCTCACAACTTGGTATCAGAGCACGTTCACCCTGGGAAGGTTAGGAAAAATGACACAGAAAATGATTGAGGTGCAGCTCGATGTGACGG
ACCCTGATCTCGAAGGAATCGAGAAAGAAATGCATAAGTTACCTGCGATAGAAAGGAACCCGACGAAGCTTTCACATACTTCTGAGGAGACGGTCAAGGCCTTGGCGACG
ATTGCAAGTGAAATGGTCCATTGGCGAACGAAACCGTCGTCTTCTGACGTCACGGAGGCATTGGGTTCGAAAGGAAAGGAAAGAGAAGGCAGTGCGATGAAGGAAACGGA
AAACCAAGGCGTTGACGCATCTCCTTCGAGCACGTTCACCCTGGGAAGGTTAGGAAAAATGACACAGAAAAGGATTGAGGTGCGGCTCAATGTGACGGACACTGAGCTCG
AAGGAATCGAGAAAGAAATGCATAAGTTACCTGCGATCGAAAGGAACCCGCGCGAAGCTTTCGCAAACTTCTGA
Protein sequenceShow/hide protein sequence
MSSTKQLSKTHVERLVEIEEQLLYLREVPDAIRFVESRLAEISTKADKVDAVAGRVDGMPIQELMMRVENLESKATRPGSYERGDSLSGSAALMEEHVDGLDSSQKAIVQ
MVTDLSDDVKAALDVNRGGGCEIDPLCHRQSETELADLLVGERYLTTWYQSTFTLGRLGKMTQKMIEVQLDVTDPDLEGIEKEMHKLPAIERNPTKLSHTSEETVKALAT
IASEMVHWRTKPSSSDVTEALGSKGKEREGSAMKETENQGVDASPSSTFTLGRLGKMTQKRIEVRLNVTDTELEGIEKEMHKLPAIERNPREAFANF