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Spg007090 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007090
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionAP complex subunit sigma
Genome locationscaffold9:47120918..47124312
RNA-Seq ExpressionSpg007090
SyntenySpg007090
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0072583 - clathrin-dependent endocytosis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030122 - AP-2 adaptor complex (cellular component)
GO:0035615 - clathrin adaptor activity (molecular function)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9853533.1 hypothetical protein H0E87_005497 [Populus deltoides]2.6e-5598.2Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFF+LCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKVC
        LDLVFNFHKVC
Subjt:  LDLVFNFHKVC

KDO84851.1 hypothetical protein CISIN_1g032349mg [Citrus sinensis]1.1e-5599.1Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKVC
        LDLVFNFHKVC
Subjt:  LDLVFNFHKVC

OAY50587.1 hypothetical protein MANES_05G147900v8 [Manihot esculenta]1.1e-5599.1Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKVC
        LDLVFNFHKVC
Subjt:  LDLVFNFHKVC

XP_004136383.1 AP-2 complex subunit sigma [Cucumis sativus]4.4e-55100Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNFHKV
Subjt:  LDLVFNFHKV

XP_017238425.1 PREDICTED: AP-2 complex subunit sigma [Daucus carota subsp. sativus]4.4e-55100Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNFHKV
Subjt:  LDLVFNFHKV

TrEMBL top hitse value%identityAlignment
A0A067HB09 AP complex subunit sigma5.5e-5699.1Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKVC
        LDLVFNFHKVC
Subjt:  LDLVFNFHKVC

A0A2C9VWA3 AP complex subunit sigma5.5e-5699.1Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKVC
        LDLVFNFHKVC
Subjt:  LDLVFNFHKVC

A0A2P2MI94 AP complex subunit sigma1.6e-5597.3Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFI+LQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHK+IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKVC
        LDLVFNFHKVC
Subjt:  LDLVFNFHKVC

A0A6J1IET7 AP complex subunit sigma2.1e-55100Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNFHKV
Subjt:  LDLVFNFHKV

K7MP16 AP complex subunit sigma1.6e-5597.3Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPK+TNFVEFRTHK+IYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKVC
        LDLVFNFHKVC
Subjt:  LDLVFNFHKVC

SwissProt top hitse value%identityAlignment
O50016 AP-2 complex subunit sigma2.2e-5798.18Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNFHKV
Subjt:  LDLVFNFHKV

Q4ICG5 AP-2 complex subunit sigma1.9e-3768.47Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVC
        M+ FIL+QNRQGKTRLAK+Y P  + +K K++ EVHRLV  RD K+ +NFVEFR +K++YRRYAGLFF  CVD  DNELA+LE IH FVE+LD FF NVC
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVC

Query:  ELDLVFNFHKV
        ELDLVFNF+KV
Subjt:  ELDLVFNFHKV

Q54H39 AP-2 complex subunit sigma6.3e-4170.91Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MI FIL+QNRQGKTRL+K+Y P E+ EK K+ +E+H++V +R+ KFTNFVEFRTH+++YRRYAGLFFS+CVD TDNEL  LE IHLFVE+LD +F NVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNF+KV
Subjt:  LDLVFNFHKV

Q7SAQ1 AP-2 complex subunit sigma1.6e-3972.07Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVC
        M+ FIL+QNRQGKTRLAK+YVP  + EK K++ E+HRLV  RD K+ +NFVEFR HKV+YRRYAGLFF  CVD  DNELAYLE IH FVE+LD FF NVC
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVC

Query:  ELDLVFNFHKV
        ELDLVFNF+KV
Subjt:  ELDLVFNFHKV

Q84WL9 AP-2 complex subunit sigma1.6e-5597.27Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNFHKV
Subjt:  LDLVFNFHKV

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein1.1e-5697.27Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYRRYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDLVFNFHKV
Subjt:  LDLVFNFHKV

AT2G17380.1 associated protein 192.7e-3155.96Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NF+E+R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHK
        LDL+FNFHK
Subjt:  LDLVFNFHK

AT2G19790.1 SNARE-like superfamily protein7.2e-2451.85Show/hide
Query:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL
        IRFIL+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +K++YRRYA LFF + VD  +NELA LE IHL VE +D  F NVCEL
Subjt:  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCEL

Query:  DLVFNFHK
        D++F+  K
Subjt:  DLVFNFHK

AT4G35410.1 Clathrin adaptor complex small chain family protein9.4e-3257.27Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NFVE+R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHKV
        LDL+FNFHKV
Subjt:  LDLVFNFHKV

AT4G35410.2 Clathrin adaptor complex small chain family protein2.7e-3156.88Show/hide
Query:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE
        MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NFVE+R +KV+Y+RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCE
Subjt:  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCE

Query:  LDLVFNFHK
        LDL+FNFHK
Subjt:  LDLVFNFHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCGGTTCATACTTTTGCAGAACAGGCAGGGCAAGACCCGTCTGGCTAAGTACTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAGTACGAGGTTCACCG
ATTGGTGGTAAATAGAGATCCCAAGTTCACGAATTTCGTTGAGTTCCGAACACACAAGGTAATCTACAGACGATATGCAGGGTTATTTTTCTCTCTTTGTGTGGACATAA
CAGACAACGAGTTGGCCTATCTCGAGTGTATTCATTTGTTTGTGGAGATTTTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTT
TGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCCGGTTCATACTTTTGCAGAACAGGCAGGGCAAGACCCGTCTGGCTAAGTACTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAGTACGAGGTTCACCG
ATTGGTGGTAAATAGAGATCCCAAGTTCACGAATTTCGTTGAGTTCCGAACACACAAGGTAATCTACAGACGATATGCAGGGTTATTTTTCTCTCTTTGTGTGGACATAA
CAGACAACGAGTTGGCCTATCTCGAGTGTATTCATTTGTTTGTGGAGATTTTGGATCATTTCTTCAGCAATGTGTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTT
TGTTGA
Protein sequenceShow/hide protein sequence
MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV
C