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Spg007133 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007133
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold9:48161927..48163477
RNA-Seq ExpressionSpg007133
SyntenySpg007133
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045139.1 hypothetical protein E6C27_scaffold30G001380 [Cucumis melo var. makuwa]2.4e-0945.45Show/hide
Query:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF
        GG I+  E+     + +E R+K+R NY GF+PA VRI D E N FS+Q+VT+ +G  LI++ V +HG F   AA  F
Subjt:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF

KAA0056565.1 hypothetical protein E6C27_scaffold288G00700 [Cucumis melo var. makuwa]2.4e-0946.75Show/hide
Query:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF
        GG I+  E+     + V+ R+K+R NY GF+PA VRI D E N FS+Q+VT+ +G  LI++ V +HG F   AA AF
Subjt:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF

TYK03139.1 hypothetical protein E5676_scaffold11G00140 [Cucumis melo var. makuwa]8.1e-1048.05Show/hide
Query:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF
        GG I+  E+     + +E R+K+R NY GF+PA VRI D E N FSVQ+VT+ +G  LI++ V +HG F   AA AF
Subjt:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF

TYK23598.1 hypothetical protein E5676_scaffold500G001100 [Cucumis melo var. makuwa]2.4e-0945.45Show/hide
Query:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF
        GG I+  E+     + +E R+K+R NY GF+PA VRI D E N FS+Q+VT+ +G  LI++ V +HG F   AA  F
Subjt:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF

XP_022149859.1 uncharacterized protein LOC111018186 [Momordica charantia]2.4e-2243.24Show/hide
Query:  AVKGNLGGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGENAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAFHRGPQDPGFSPTDIWRIK
        A+   LGGFI+Y+++NS  ++C ++ +K++ NYCGFIPAE+  +DG   F  ++V+++    L  K VGIHG FS  AA +FH+G  +   +  D WR++
Subjt:  AVKGNLGGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGENAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAFHRGPQDPGFSPTDIWRIK

Query:  NGADYPVVNIR
        NG +YP VNI+
Subjt:  NGADYPVVNIR

TrEMBL top hitse value%identityAlignment
A0A5A7TV64 DUF4283 domain-containing protein1.1e-0945.45Show/hide
Query:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF
        GG I+  E+     + +E R+K+R NY GF+PA VRI D E N FS+Q+VT+ +G  LI++ V +HG F   AA  F
Subjt:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF

A0A5D3BYI6 Uncharacterized protein3.9e-1048.05Show/hide
Query:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF
        GG I+  E+     + +E R+K+R NY GF+PA VRI D E N FSVQ+VT+ +G  LI++ V +HG F   AA AF
Subjt:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF

A0A5D3DJE1 DUF4283 domain-containing protein1.1e-0945.45Show/hide
Query:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF
        GG I+  E+     + +E R+K+R NY GF+PA VRI D E N FS+Q+VT+ +G  LI++ V +HG F   AA  F
Subjt:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF

A0A5D3DKV0 DUF4283 domain-containing protein1.1e-0946.75Show/hide
Query:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF
        GG I+  E+     + V+ R+K+R NY GF+PA VRI D E N FS+Q+VT+ +G  LI++ V +HG F   AA AF
Subjt:  GGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGE-NAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAF

A0A6J1D6X4 uncharacterized protein LOC1110181861.2e-2243.24Show/hide
Query:  AVKGNLGGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGENAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAFHRGPQDPGFSPTDIWRIK
        A+   LGGFI+Y+++NS  ++C ++ +K++ NYCGFIPAE+  +DG   F  ++V+++    L  K VGIHG FS  AA +FH+G  +   +  D WR++
Subjt:  AVKGNLGGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGENAFSVQIVTYQKGPLLIDKVVGIHGCFSPPAAHAFHRGPQDPGFSPTDIWRIK

Query:  NGADYPVVNIR
        NG +YP VNI+
Subjt:  NGADYPVVNIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGATTATAGCTTTAGTGACGTTACGCCACAGGACTTTAGCTTTGCCCTTCAACCACCCGCCTTCAAGAGCTTTGCTCAACCAACTGACCACACACTTAGGGAATC
TGCTTTGAACCTTGTCCATTGTATTAATGCTGTGAAGGGCAATTTGGGTGGCTTCATTGAATATGAGGAAGATAACTCATTGCTGCTGGACTGTGTAGAGTTAAGGCTGA
AGATCAGAGAGAATTACTGCGGATTCATCCCAGCTGAAGTTCGAATTATAGATGGCGAAAATGCCTTCAGTGTGCAGATTGTCACGTATCAAAAGGGGCCGCTGCTGATC
GACAAAGTGGTCGGAATCCATGGCTGTTTCTCCCCGCCGGCCGCACATGCTTTTCACAGAGGACCTCAGGACCCAGGCTTTAGCCCAACAGATATATGGAGAATCAAAAA
TGGGGCGGATTACCCAGTGGTTAATATCCGAGAATTAATTAGCGATAAGACAAAAAGTGATGGACAGCTGGAAAACTTTAATGAAAATTTTGAATTATCCTGCCAGAAGG
GTAAAAGTCAAATAGCTGAGGAAGCTGGACCTTCAAAGTTCGGATCTTCTAAGGCCCAATGGAACAAAAAGAAGAAAGCCCAGGATTCATTAAGTGAGGAAGATGGGGAA
GCCCAGCAAGCCAACGAAAAGAAAAGAAAAAGGGTCTCTTTCGCCAACAAAGCCCAGGTGAAGACTTTTAAACGGGGAAACATTCAAAGTACAAATAGGTACGAAAGCCC
CCAACCAGCGATGAACAAAAATAATATATGGAGCGAATTTCCAGGTATGGAATCTGACCTCTCTTTCTCTAGTCCTGCCAGTAAAGAGACTGAAATCGAAGAAAGGGGAA
GCCTTAGATCTTTCGAGGTTTTTGACATGGATATTCCGGAGGGATATCACCATTGTTTCGAGGAACTCAATGAAACGGATAGAGTTATGCAAACTCAAGAGACAGTACAG
ATAAATTCTCCTTCTTATGATCACAATATCAGAGCTCTCGATAAAAATGATCTTCTGCTTGAAGAAGGAAATGAACCTCCCAGAATAGAGGGCAGTGGGGAGGACTCTCC
TAAGGCATTAGCGATCCTTAAACCACACAGCGAAGAGGATAAGCCAGGGCGTCAGCAAGTTCTAGAGGGCTTCGCGATTAGCAAGGAGATTGTTTTAACTCTACGGAAAA
ATAACCTTTGTATTAGACCGATAGTGGGATCCAACAATAAGAAGGGGAATACCTCCCAGAAAAGGAGAAACCAAGAGATGACTAACCTCCTTCGTTCGTGGGAAAAGGAG
GCGGGTTGCATTACAGAATTGGATAACGAAGGGGTAGACGACTTAGAAGTAGATAATAGAACTTCTTCGGGCGATAATGGTTTTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGATTATAGCTTTAGTGACGTTACGCCACAGGACTTTAGCTTTGCCCTTCAACCACCCGCCTTCAAGAGCTTTGCTCAACCAACTGACCACACACTTAGGGAATC
TGCTTTGAACCTTGTCCATTGTATTAATGCTGTGAAGGGCAATTTGGGTGGCTTCATTGAATATGAGGAAGATAACTCATTGCTGCTGGACTGTGTAGAGTTAAGGCTGA
AGATCAGAGAGAATTACTGCGGATTCATCCCAGCTGAAGTTCGAATTATAGATGGCGAAAATGCCTTCAGTGTGCAGATTGTCACGTATCAAAAGGGGCCGCTGCTGATC
GACAAAGTGGTCGGAATCCATGGCTGTTTCTCCCCGCCGGCCGCACATGCTTTTCACAGAGGACCTCAGGACCCAGGCTTTAGCCCAACAGATATATGGAGAATCAAAAA
TGGGGCGGATTACCCAGTGGTTAATATCCGAGAATTAATTAGCGATAAGACAAAAAGTGATGGACAGCTGGAAAACTTTAATGAAAATTTTGAATTATCCTGCCAGAAGG
GTAAAAGTCAAATAGCTGAGGAAGCTGGACCTTCAAAGTTCGGATCTTCTAAGGCCCAATGGAACAAAAAGAAGAAAGCCCAGGATTCATTAAGTGAGGAAGATGGGGAA
GCCCAGCAAGCCAACGAAAAGAAAAGAAAAAGGGTCTCTTTCGCCAACAAAGCCCAGGTGAAGACTTTTAAACGGGGAAACATTCAAAGTACAAATAGGTACGAAAGCCC
CCAACCAGCGATGAACAAAAATAATATATGGAGCGAATTTCCAGGTATGGAATCTGACCTCTCTTTCTCTAGTCCTGCCAGTAAAGAGACTGAAATCGAAGAAAGGGGAA
GCCTTAGATCTTTCGAGGTTTTTGACATGGATATTCCGGAGGGATATCACCATTGTTTCGAGGAACTCAATGAAACGGATAGAGTTATGCAAACTCAAGAGACAGTACAG
ATAAATTCTCCTTCTTATGATCACAATATCAGAGCTCTCGATAAAAATGATCTTCTGCTTGAAGAAGGAAATGAACCTCCCAGAATAGAGGGCAGTGGGGAGGACTCTCC
TAAGGCATTAGCGATCCTTAAACCACACAGCGAAGAGGATAAGCCAGGGCGTCAGCAAGTTCTAGAGGGCTTCGCGATTAGCAAGGAGATTGTTTTAACTCTACGGAAAA
ATAACCTTTGTATTAGACCGATAGTGGGATCCAACAATAAGAAGGGGAATACCTCCCAGAAAAGGAGAAACCAAGAGATGACTAACCTCCTTCGTTCGTGGGAAAAGGAG
GCGGGTTGCATTACAGAATTGGATAACGAAGGGGTAGACGACTTAGAAGTAGATAATAGAACTTCTTCGGGCGATAATGGTTTTTTATGA
Protein sequenceShow/hide protein sequence
MLDYSFSDVTPQDFSFALQPPAFKSFAQPTDHTLRESALNLVHCINAVKGNLGGFIEYEEDNSLLLDCVELRLKIRENYCGFIPAEVRIIDGENAFSVQIVTYQKGPLLI
DKVVGIHGCFSPPAAHAFHRGPQDPGFSPTDIWRIKNGADYPVVNIRELISDKTKSDGQLENFNENFELSCQKGKSQIAEEAGPSKFGSSKAQWNKKKKAQDSLSEEDGE
AQQANEKKRKRVSFANKAQVKTFKRGNIQSTNRYESPQPAMNKNNIWSEFPGMESDLSFSSPASKETEIEERGSLRSFEVFDMDIPEGYHHCFEELNETDRVMQTQETVQ
INSPSYDHNIRALDKNDLLLEEGNEPPRIEGSGEDSPKALAILKPHSEEDKPGRQQVLEGFAISKEIVLTLRKNNLCIRPIVGSNNKKGNTSQKRRNQEMTNLLRSWEKE
AGCITELDNEGVDDLEVDNRTSSGDNGFL