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Spg007145 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007145
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold9:46659595..46660342
RNA-Seq ExpressionSpg007145
SyntenySpg007145
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A445BA22 RNase H domain-containing protein9.7e-0428.19Show/hide
Query:  SAIWLDKSYGLFGISEINAKQIISDIRSLTDAFV-LRESNLKPKESKNQ-ASHASWDPPNSEQWKLNAD----ADRKLNQGGGRIAYPLVVESDSIEVVN
        S+IW  K+  +F    ++    I+ IR+ ++ F  +  SNLKP   +    S  SW  P  +  K+NAD        LN         L+VESDS E +N
Subjt:  SAIWLDKSYGLFGISEINAKQIISDIRSLTDAFV-LRESNLKPKESKNQ-ASHASWDPPNSEQWKLNAD----ADRKLNQGGGRIAYPLVVESDSIEVVN

Query:  LLNQKSKDLSEVAVVIDEIQAFASSIEVVSFSKCSRDSKFLAHNLARAG
         +N+  +     A +I +I    + I+ +++    R + F+   LA+ G
Subjt:  LLNQKSKDLSEVAVVIDEIQAFASSIEVVSFSKCSRDSKFLAHNLARAG
A0A6J1CP26 uncharacterized protein LOC1110134129.7e-0425.71Show/hide
Query:  DIRSLTDAFVL----RESNLKPKESKNQASH----------ASWDPPNSEQWKLNADADRKLNQGGGRIAY-----------------------------
        DI+   D +++    R +NLK K S N+  H          A W PP S  WKLN +A  + +   G I +                             
Subjt:  DIRSLTDAFVL----RESNLKPKESKNQASH----------ASWDPPNSEQWKLNADADRKLNQGGGRIAY-----------------------------

Query:  ---------------PLVVESDSIEVVNLLNQKSKDLSEVAVVIDEIQAFASSIEVVSFSKCSRDSKFLAHNLAR
                       P+ +ESDS+E ++LL+++ +D +E+  +++EI      +E+VS    SR++  +AH LAR
Subjt:  ---------------PLVVESDSIEVVNLLNQKSKDLSEVAVVIDEIQAFASSIEVVSFSKCSRDSKFLAHNLAR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCTCGGTGTGTAGGGATTGGTGCCGATCAAAAGACTTCTGGGCTGAAACTATTCAGAGCATTGACAAATCGGAGTGCAATTTGGCTGGACAAATCCTATGGGCT
ATTTGGAATATCAGAAATCAATGCAAAACAAATTATCAGTGATATTAGAAGCCTAACTGATGCGTTTGTGTTGAGAGAGTCAAACCTGAAGCCGAAAGAATCTAAGAACC
AGGCGAGTCATGCGAGTTGGGATCCTCCGAATTCCGAGCAGTGGAAGCTAAATGCGGATGCAGATCGGAAATTAAATCAGGGTGGGGGTCGTATTGCTTACCCTTTAGTC
GTGGAATCCGACTCCATAGAGGTTGTTAACCTTCTCAATCAGAAATCGAAGGATCTTTCTGAGGTTGCGGTAGTGATCGATGAAATTCAAGCTTTCGCGTCGTCGATCGA
AGTCGTTTCTTTTTCCAAATGCTCCAGAGATAGCAAATTTTTGGCGCACAATCTTGCGCGCGCTGGTGCCATGTATGGGTCTTGCGATTTTTTTGTTGATCTTCCGCGTC
CGTTTCTGAGGCCGGAAGTTTTGGGTAGGGATGATATCTTCCCGCCGTGGTTTTCCTCAGTTTTAGATGATGTTGTTAATGGTGTACCTAACTCTTTTAATTCTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCTCGGTGTGTAGGGATTGGTGCCGATCAAAAGACTTCTGGGCTGAAACTATTCAGAGCATTGACAAATCGGAGTGCAATTTGGCTGGACAAATCCTATGGGCT
ATTTGGAATATCAGAAATCAATGCAAAACAAATTATCAGTGATATTAGAAGCCTAACTGATGCGTTTGTGTTGAGAGAGTCAAACCTGAAGCCGAAAGAATCTAAGAACC
AGGCGAGTCATGCGAGTTGGGATCCTCCGAATTCCGAGCAGTGGAAGCTAAATGCGGATGCAGATCGGAAATTAAATCAGGGTGGGGGTCGTATTGCTTACCCTTTAGTC
GTGGAATCCGACTCCATAGAGGTTGTTAACCTTCTCAATCAGAAATCGAAGGATCTTTCTGAGGTTGCGGTAGTGATCGATGAAATTCAAGCTTTCGCGTCGTCGATCGA
AGTCGTTTCTTTTTCCAAATGCTCCAGAGATAGCAAATTTTTGGCGCACAATCTTGCGCGCGCTGGTGCCATGTATGGGTCTTGCGATTTTTTTGTTGATCTTCCGCGTC
CGTTTCTGAGGCCGGAAGTTTTGGGTAGGGATGATATCTTCCCGCCGTGGTTTTCCTCAGTTTTAGATGATGTTGTTAATGGTGTACCTAACTCTTTTAATTCTATTTAA
Protein sequenceShow/hide protein sequence
MFSRCVGIGADQKTSGLKLFRALTNRSAIWLDKSYGLFGISEINAKQIISDIRSLTDAFVLRESNLKPKESKNQASHASWDPPNSEQWKLNADADRKLNQGGGRIAYPLV
VESDSIEVVNLLNQKSKDLSEVAVVIDEIQAFASSIEVVSFSKCSRDSKFLAHNLARAGAMYGSCDFFVDLPRPFLRPEVLGRDDIFPPWFSSVLDDVVNGVPNSFNSI