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Spg007183 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007183
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein RADIALIS-like 3
Genome locationscaffold9:46606616..46607980
RNA-Seq ExpressionSpg007183
SyntenySpg007183
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]1.2e-4088.3Show/hide
Query:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH
        MGS SNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+S PA RGF F+D+EQRMRSL+L+
Subjt:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH

XP_008465612.1 PREDICTED: protein RADIALIS-like 3 [Cucumis melo]5.2e-4193.1Show/hide
Query:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR
        MGS SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+SGPA RGFCF+D+EQR
Subjt:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR

XP_022138113.1 protein RADIALIS-like 3 [Momordica charantia]5.2e-4187.37Show/hide
Query:  MGS-ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH
        MGS  SNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKTAEEVKRHYE+LV+DVNKIETGQVPFPNYRKS    RGFCF+DEE+RMRSLRLH
Subjt:  MGS-ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH

XP_022941099.1 protein RADIALIS-like 3 [Cucurbita moschata]3.1e-3885.11Show/hide
Query:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH
        M S S WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y KS PAG GF FVDEEQRMRSL+LH
Subjt:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]5.9e-4594.68Show/hide
Query:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH
        MGS S+WTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+SGPA RGFCFVDEEQRMRSLRLH
Subjt:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein5.6e-4188.3Show/hide
Query:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH
        MGS SNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+S PA RGF F+D+EQRMRSL+L+
Subjt:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH

A0A1S3CPA0 protein RADIALIS-like 32.5e-4193.1Show/hide
Query:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR
        MGS SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+SGPA RGFCF+D+EQR
Subjt:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR

A0A5D3D7Z0 Protein RADIALIS-like 32.5e-4193.1Show/hide
Query:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR
        MGS SNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYE+LVEDVNKIETGQVPFPNYR+SGPA RGFCF+D+EQR
Subjt:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQR

A0A6J1CC55 protein RADIALIS-like 32.5e-4187.37Show/hide
Query:  MGS-ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH
        MGS  SNWTAKQNKVFENALA+YDKDTP+RWHNLARAVGGKTAEEVKRHYE+LV+DVNKIETGQVPFPNYRKS    RGFCF+DEE+RMRSLRLH
Subjt:  MGS-ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH

A0A6J1FM85 protein RADIALIS-like 31.5e-3885.11Show/hide
Query:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH
        M S S WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y KS PAG GF FVDEEQRMRSL+LH
Subjt:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.3e-2864.84Show/hide
Query:  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL
        S+ +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     EE+RMR++RL
Subjt:  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL

Q1A173 Protein RADIALIS-like 62.0e-2458.24Show/hide
Query:  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL
        S S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+      R     D  ++M++L++
Subjt:  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL

Q58FS3 Transcription factor RADIALIS1.6e-2457.61Show/hide
Query:  GSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL
        GS   W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+G+VPFPNYR +G   +      +E+R R+L++
Subjt:  GSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL

Q6NNN0 Protein RADIALIS-like 34.1e-2567.12Show/hide
Query:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSG
        M S+++WT K+NK+FE ALA YD+DTP+RWHN+ARAVGGK+AEEV+RHYE L+ DVN IE+G+ P PNYR +G
Subjt:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSG

Q9SIJ5 Protein RADIALIS-like 26.4e-2660.44Show/hide
Query:  ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR-KSGPAGRGFCFVDEEQRMRSLRL
        + +WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+  +G + RG    DEE+RMRS++L
Subjt:  ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR-KSGPAGRGFCFVDEEQRMRSLRL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 55.2e-2365.71Show/hide
Query:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR
        M S+S+WT+KQNK+FE ALA+YDKDTP+RW N+A+AVG K+AEEVKRHY+ LVED+  IE   VP P Y+
Subjt:  MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR

AT1G75250.1 RAD-like 65.5e-2572.06Show/hide
Query:  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR
        S S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+
Subjt:  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR

AT1G75250.2 RAD-like 61.5e-2558.24Show/hide
Query:  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL
        S S WT  QNK+FE ALA+YDKDTP+RWHN+A+AVGGKT EEVKRHY+ LVED+  IETG+VP PNY+      R     D  ++M++L++
Subjt:  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL

AT2G21650.1 Homeodomain-like superfamily protein4.5e-2760.44Show/hide
Query:  ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR-KSGPAGRGFCFVDEEQRMRSLRL
        + +WT KQNK FE ALA+YD+DTP+RWHN+ARAVGGKT EE KR Y+ LV D+  IE G VPFP+Y+  +G + RG    DEE+RMRS++L
Subjt:  ASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYR-KSGPAGRGFCFVDEEQRMRSLRL

AT4G39250.1 RAD-like 11.7e-2964.84Show/hide
Query:  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL
        S+ +WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE G VPFPNYR SG    G     EE+RMR++RL
Subjt:  SASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCTGCATCCAATTGGACGGCCAAGCAGAACAAAGTGTTCGAAAATGCTTTAGCGATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGT
CGGCGGCAAGACGGCGGAGGAAGTCAAACGGCACTACGAAAAGCTCGTTGAAGATGTCAACAAGATCGAAACCGGCCAAGTTCCTTTCCCCAATTACAGAAAATCCGGAC
CCGCAGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGATGAGGAGTCTACGGTTGCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTCTGCATCCAATTGGACGGCCAAGCAGAACAAAGTGTTCGAAAATGCTTTAGCGATCTACGACAAAGACACGCCGGAGCGGTGGCACAACCTCGCCAGAGCCGT
CGGCGGCAAGACGGCGGAGGAAGTCAAACGGCACTACGAAAAGCTCGTTGAAGATGTCAACAAGATCGAAACCGGCCAAGTTCCTTTCCCCAATTACAGAAAATCCGGAC
CCGCAGGCAGAGGATTTTGCTTTGTTGACGAAGAACAACGGATGAGGAGTCTACGGTTGCACTGA
Protein sequenceShow/hide protein sequence
MGSASNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYEKLVEDVNKIETGQVPFPNYRKSGPAGRGFCFVDEEQRMRSLRLH