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Spg007198 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007198
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionProtein RADIALIS-like 3
Genome locationscaffold9:46627190..46629204
RNA-Seq ExpressionSpg007198
SyntenySpg007198
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60114.2 hypothetical protein Csa_000871 [Cucumis sativus]6.3e-4181.98Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQRQKNM-K
        MASSS+TS  GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKNAGCNGRGYADQQR + + K
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQRQKNM-K

Query:  EMRSENHNGIE
        E+      G++
Subjt:  EMRSENHNGIE

XP_008466554.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]6.3e-4193.62Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSS+TS  GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]3.6e-3694.25Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGR
        MASSS+TSARGFYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDVKKIEAGQVQIPLYKN G NGR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGR

XP_022936283.1 protein RADIALIS-like 3 [Cucurbita moschata]7.0e-4087.38Show/hide
Query:  MASSSLTS-ARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQRQKNMK
        MASSS+TS ARGFYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN GCNGRGYADQ+ +   K
Subjt:  MASSSLTS-ARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQRQKNMK

Query:  EMR
         ++
Subjt:  EMR

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]2.2e-3389.53Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNG
        MASSS T+A GFYSSWTK+ENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKN G NG
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNG

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein3.1e-4193.62Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSS+TS  GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A1S3CRN8 protein RADIALIS-like 43.1e-4193.62Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSS+TS  GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A5A7TE80 Protein RADIALIS-like 33.1e-4193.62Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR
        MASSS+TS  GFYSSWTKKENKKFEEALAF+D+DTPDRFEKVARAVGGGKTAEEARRLYELLVRDV+KIEAGQVQIPLYKNAGCNGRGYADQQR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQR

A0A6J1DP29 protein RADIALIS-like 41.7e-3694.25Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGR
        MASSS+TSARGFYSSWTK+ENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELL RDVKKIEAGQVQIPLYKN G NGR
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGR

A0A6J1FCU5 protein RADIALIS-like 33.4e-4087.38Show/hide
Query:  MASSSLTS-ARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQRQKNMK
        MASSS+TS ARGFYSSWTKKENKKFEEALA+YDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN GCNGRGYADQ+ +   K
Subjt:  MASSSLTS-ARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQRQKNMK

Query:  EMR
         ++
Subjt:  EMR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.2e-1852.48Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAG--CNGRGYADQQRQKNM
        MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR   +++R +NM
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAG--CNGRGYADQQRQKNM

Query:  K
        +
Subjt:  K

Q1G3C4 Protein RADIALIS-like 47.3e-1656.79Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN

Q58FS3 Transcription factor RADIALIS3.3e-1650Show/hide
Query:  LTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQRQKNMK
        + S RG    W+ KENK FE ALA YD+DTPDR+  VARAV  G+T EE ++ YE+LV D+K IE+G+V  P Y+  G N +   D++R +N+K
Subjt:  LTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQRQKNMK

Q6NNN0 Protein RADIALIS-like 32.1e-1861.18Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCN
        MAS+S++S+    +SWT+KENK FE ALA YDQDTPDR+  VARAV GGK+AEE RR YELL+RDV  IE+G+   P Y++ G N
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCN

Q9SIJ5 Protein RADIALIS-like 24.6e-1854.9Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCN---GRGYADQQRQKN
        MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD++ IE G V  P YK    N   GR   +++R ++
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCN---GRGYADQQRQKN

Query:  MK
        MK
Subjt:  MK

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.2e-1650.49Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NAGCNGRGY--ADQQRQK
        MASSS++S+    SSWT K+NK FE ALA YD+DTPDR++ VA+AV G K+AEE +R Y++LV D+  IE   V +P YK  + G   RG    D +  K
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYK--NAGCNGRGY--ADQQRQK

Query:  NMK
        NM+
Subjt:  NMK

AT1G75250.2 RAD-like 61.5e-1648.42Show/hide
Query:  TSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGY--ADQQRQKNMK
        +++R   S WT  +NK FE ALA YD+DTPDR+  VA+AV GGKT EE +R Y++LV D+  IE G+V +P YK    N R     D ++ KN+K
Subjt:  TSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGY--ADQQRQKNMK

AT2G18328.1 RAD-like 45.2e-1756.79Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN
        MASSS+++     SSWT +E+K+FE ALA +D+DTPDR++K+ARAV GGK+ EE +R YELL+RDV  IE+G+   P Y+N
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKN

AT2G21650.1 Homeodomain-like superfamily protein3.2e-1954.9Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCN---GRGYADQQRQKN
        MAS S++S      SWT K+NK FE ALA YDQDTPDR+  VARAV GGKT EEA+R Y+LLVRD++ IE G V  P YK    N   GR   +++R ++
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCN---GRGYADQQRQKN

Query:  MK
        MK
Subjt:  MK

AT4G39250.1 RAD-like 18.5e-2052.48Show/hide
Query:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAG--CNGRGYADQQRQKNM
        MASSS++S      SWT K+NK FE+ALA YDQDTP+R++ VA+ V GGKT EE +R YELLV+D+  IE G V  P Y+ +G   NGR   +++R +NM
Subjt:  MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAG--CNGRGYADQQRQKNM

Query:  K
        +
Subjt:  K


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCAAGCTCTCTCACGTCGGCACGTGGCTTTTACTCATCCTGGACGAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGACGGCTCTATGAGTTACTAGTGCGAGATGTCAAAAAAATAGAAGCTGGTCAAG
TTCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGACAAAAGAACATGAAGGAGATGAGAAGTGAGAACCACAATGGAATCGAG
AAATTTGATTATGCTACTTTTAAAACGGAATCAGAGAGGAGCGATTCGTCACTTACATATAGAGCTACTGACCTTTACAACGCTGAGGTAGCAGTAGAAACATTGCAAGA
TAGAGATAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCAAGCTCTCTCACGTCGGCACGTGGCTTTTACTCATCCTGGACGAAAAAAGAAAACAAGAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGA
CCGTTTTGAGAAAGTAGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGCAAGACGGCTCTATGAGTTACTAGTGCGAGATGTCAAAAAAATAGAAGCTGGTCAAG
TTCAAATACCCCTCTACAAGAACGCTGGATGTAATGGCAGAGGGTATGCTGACCAGCAGAGACAAAAGAACATGAAGGAGATGAGAAGTGAGAACCACAATGGAATCGAG
AAATTTGATTATGCTACTTTTAAAACGGAATCAGAGAGGAGCGATTCGTCACTTACATATAGAGCTACTGACCTTTACAACGCTGAGGTAGCAGTAGAAACATTGCAAGA
TAGAGATAGCTGA
Protein sequenceShow/hide protein sequence
MASSSLTSARGFYSSWTKKENKKFEEALAFYDQDTPDRFEKVARAVGGGKTAEEARRLYELLVRDVKKIEAGQVQIPLYKNAGCNGRGYADQQRQKNMKEMRSENHNGIE
KFDYATFKTESERSDSSLTYRATDLYNAEVAVETLQDRDS