CuGenDBv2

Gene ID	Spg007206
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mitochondrial
Genome location	scaffold9:46989765..46990202
RNA-Seq Expression	Spg007206
Synteny	Spg007206
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0004386 - helicase activity (molecular function)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7024167.1 hypothetical protein SDJN02_12980, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.2e-59

93.65

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTP+QTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIKVRVSVLP
        TWPVIIP+EELN+PAPSIKVR+ +LP
Subjt:  TWPVIIPEEELNRPAPSIKVRVSVLP

XP_022139291.1 uncharacterized protein LOC111010210 [Momordica charantia]

3.6e-57

94.21

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD+PPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIKVR
        TWP++IPEEEL +P PSIK R
Subjt:  TWPVIIPEEELNRPAPSIKVR

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

4.6e-57

95.04

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIKVR
        TWPVIIP+EELN+PAPSIK R
Subjt:  TWPVIIPEEELNRPAPSIKVR

XP_022974808.1 uncharacterized protein LOC111473560 isoform X3 [Cucurbita maxima]

5.5e-58

94.31

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIKVRVS
        TWPVIIP+EELN+PAPSIK+R+S
Subjt:  TWPVIIPEEELNRPAPSIKVRVS

XP_023536065.1 uncharacterized protein LOC111797318 [Cucurbita pepo subsp. pepo]

7.9e-57

95.8

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVK+EFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTPAQTIRN ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIK
        TWPVIIP+EELN+PAPSIK
Subjt:  TWPVIIPEEELNRPAPSIK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CC86 uncharacterized protein LOC111010210

1.7e-57

94.21

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD+PPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIKVR
        TWP++IPEEEL +P PSIK R
Subjt:  TWPVIIPEEELNRPAPSIKVR

A0A6J1IB98 uncharacterized protein LOC111473560 isoform X2

6.5e-57

95.8

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIK
        TWPVIIP+EELN+PAPSIK
Subjt:  TWPVIIPEEELNRPAPSIK

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

2.3e-57

95.04

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIKVR
        TWPVIIP+EELN+PAPSIK R
Subjt:  TWPVIIPEEELNRPAPSIKVR

A0A6J1IHE6 uncharacterized protein LOC111473560 isoform X3

2.7e-58

94.31

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIKVRVS
        TWPVIIP+EELN+PAPSIK+R+S
Subjt:  TWPVIIPEEELNRPAPSIKVRVS

A0A6J1IZE5 uncharacterized protein LOC111481279

2.5e-56

94.21

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQIAVTFVNGVEEVFDATSTPAQTIR  ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIKVR
        TWPVIIP+EELN P PSIK R
Subjt:  TWPVIIPEEELNRPAPSIKVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

4.1e-51

79.34

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Query:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFN LDPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD++PPQI VTFVNGVEE FDA +T AQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGE

Query:  TWPVIIPEEELNRPAPSIKVR
         WPVIIP+EEL + AP +K R
Subjt:  TWPVIIPEEELNRPAPSIKVR

Sequences

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CDS sequence

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ATGTTGAAGTTCCTCTCTAAAGTGAAGATCGAATTCAATGCTCTCGATCCACGCTTAGCTTCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGCAAGGCCAAGGAATC
CAACCCCGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCGCCCGCCCCAGATCGCCGTCACCTTCGTCAATGGTGTCGAAGAGGTTTTCGACGCTACCTCTACTC
CCGCTCAAACAATTAGGAATATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTCCGGGAAGCTGGAGAAACTTGGCCGGTCATCATCCCCGAGGAGGAG
CTTAATCGACCTGCCCCCAGTATCAAGGTTCGTGTTTCTGTTCTCCCTTACTGTGAACATTTCTTGGCCCTTTTCTGCTTGAGTTTTCATTTTGGTTACTATATGTGA

mRNA sequence

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Protein sequence

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MLKFLSKVKIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDRPPQIAVTFVNGVEEVFDATSTPAQTIRNMILEKGQLLETEQMFREAGETWPVIIPEEE
LNRPAPSIKVRVSVLPYCEHFLALFCLSFHFGYYM

Spg007206 (gene) of Sponge gourd (cylindrica) v1 genome