CuGenDBv2

Gene ID	Spg007231
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	MYND-type domain-containing protein
Genome location	scaffold9:47923607..47924206
RNA-Seq Expression	Spg007231
Synteny	Spg007231
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR044508 - F-box protein At5g50450/At1g67340-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6573130.1 F-box protein, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-63

85.31

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        +SDKNLR GVALCGRAA LGHIDALRELGHCLQD Y VA+N SEGRRLLIEANAREL SITNSSLRR NCS DR + TDS+GSLLSD+G NIP  E HPA
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        NQFLR+WF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

XP_008439699.1 PREDICTED: F-box protein At1g67340 [Cucumis melo]

4.0e-63

84.62

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        +SDKNLR GVALCGRAAYLGHIDALRELGHCLQD Y V +N SEGRRLLIEANAREL  ITNSSLRR +CS  R S TDS GSLLSD+GCN P  EAHPA
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        NQFLR+WFASGRG IAEGLRLCSNSGCGRPETRLHEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

XP_022955215.1 F-box protein At5g50450 [Cucurbita moschata]

3.1e-63

85.31

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        +SDKNLR GVALCGRAA LGHIDALRELGHCLQD Y VA+N SEGRRLLIEANAREL SITNSSLRR NCS DR + TDS+GSLLSD+G NIP  E HPA
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        NQFLR+WF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

XP_022994416.1 F-box protein At5g50450-like [Cucurbita maxima]

1.4e-63

86.01

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        +SDKNLR GVALCGRAA LGHIDALRELGHCLQD Y VA+N SEGRRLLIEANAREL SITNSSLRR NCS DR S TDS+GSLLSD+G NIP  E HPA
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        NQFLR+WF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

XP_038894785.1 F-box protein At1g67340 [Benincasa hispida]

2.8e-64

84.62

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        +SDKNLR GVALCGRAAYLGHIDALRELGHCLQD Y V +N SEGRRLLIEANAREL SITNSSLRR +CSGD  S  DS GSLLSD+GCN P  EAHPA
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        N+FLR+WFASGRGF+AEGLRLCSNSGCGRPETRLHEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LTV0 MYND-type domain-containing protein

3.3e-63

84.62

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        +SDKNLR GVALCGRAAYLGHIDALRELGHCLQD Y V +N SEGRRLLIEANAREL  ITNSSLRR +CS  R S TDS GSLLSD+GCN P  EAHPA
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        NQFLR+WFASGRG IAEGLRLCSNSGCGRPETRLHEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

A0A1S3AZD5 F-box protein At1g67340

1.9e-63

84.62

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        +SDKNLR GVALCGRAAYLGHIDALRELGHCLQD Y V +N SEGRRLLIEANAREL  ITNSSLRR +CS  R S TDS GSLLSD+GCN P  EAHPA
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        NQFLR+WFASGRG IAEGLRLCSNSGCGRPETRLHEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

A0A5A7UP50 F-box protein

1.9e-63

84.62

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        +SDKNLR GVALCGRAAYLGHIDALRELGHCLQD Y V +N SEGRRLLIEANAREL  ITNSSLRR +CS  R S TDS GSLLSD+GCN P  EAHPA
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        NQFLR+WFASGRG IAEGLRLCSNSGCGRPETRLHEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

A0A6J1GUJ3 F-box protein At5g50450

1.5e-63

85.31

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        +SDKNLR GVALCGRAA LGHIDALRELGHCLQD Y VA+N SEGRRLLIEANAREL SITNSSLRR NCS DR + TDS+GSLLSD+G NIP  E HPA
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        NQFLR+WF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

A0A6J1JZ31 F-box protein At5g50450-like

6.7e-64

86.01

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        +SDKNLR GVALCGRAA LGHIDALRELGHCLQD Y VA+N SEGRRLLIEANAREL SITNSSLRR NCS DR S TDS+GSLLSD+G NIP  E HPA
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        NQFLR+WF SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

SwissProt top hits

e value

%identity

Alignment

Q9FK27 F-box protein At5g50450

1.4e-42

62.24

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        ++DKNLR GVALC R+AYLGH+DALRELGHCLQD Y V  + SEGRRLLI+ANAREL     S L     SGD           L+D    +PV E HP 
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        N+FL+EWF+SGR  +AEGLR+CS+ GCGRPETR HEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

Q9FYF9 F-box protein At1g67340

3.7e-43

56.58

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Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPT--------DSAGSLLSDYGCNI
        ++DK+LR GVALC RAA+LGH+DALRELGHCLQD Y V +N SEGRR L++ANAREL ++ +S ++  +       P              LLSD+GCN+
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPT--------DSAGSLLSDYGCNI

Query:  PVLEAHPANQFLREWFA-SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        P  E HPAN+FL +WFA  G     +GLRLCS++GCGRPETR HEFRRCSVC
Subjt:  PVLEAHPANQFLREWFA-SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

Arabidopsis top hits

e value

%identity

Alignment

AT1G67340.1 HCP-like superfamily protein with MYND-type zinc finger

2.6e-44

56.58

Show/hide

Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPT--------DSAGSLLSDYGCNI
        ++DK+LR GVALC RAA+LGH+DALRELGHCLQD Y V +N SEGRR L++ANAREL ++ +S ++  +       P              LLSD+GCN+
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPT--------DSAGSLLSDYGCNI

Query:  PVLEAHPANQFLREWFA-SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        P  E HPAN+FL +WFA  G     +GLRLCS++GCGRPETR HEFRRCSVC
Subjt:  PVLEAHPANQFLREWFA-SGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

AT5G50450.1 HCP-like superfamily protein with MYND-type zinc finger

9.9e-44

62.24

Show/hide

Query:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA
        ++DKNLR GVALC R+AYLGH+DALRELGHCLQD Y V  + SEGRRLLI+ANAREL     S L     SGD           L+D    +PV E HP 
Subjt:  ESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNIPVLEAHPA

Query:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC
        N+FL+EWF+SGR  +AEGLR+CS+ GCGRPETR HEFRRCSVC
Subjt:  NQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVC

Sequences

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CDS sequence

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ATGGAAGAGATCGGCGCCAAGACGGCTGAAACCCAGAAAGATAACTACGACGGTGAAAGCGACAAGAATCTCCGTGTTGGTGTGGCTCTGTGCGGACGAGCCGCATATCT
CGGCCATATCGACGCGCTTCGTGAACTAGGCCACTGCCTTCAAGACAGTTACGACGTCGCTGAAAACACATCCGAGGGACGTCGTCTCCTAATCGAAGCCAACGCACGTG
AGCTCGAGTCCATAACAAACTCCTCCCTCCGCCGTTTCAACTGCTCGGGCGACCGCCTGTCTCCAACAGATTCCGCCGGATCGCTCCTAAGTGACTACGGCTGCAACATT
CCGGTGCTGGAGGCTCATCCGGCAAACCAATTTCTACGAGAATGGTTCGCATCGGGCCGTGGATTTATCGCTGAAGGACTGAGGCTCTGCTCGAACAGTGGCTGTGGAAG
GCCAGAGACTCGGCTCCATGAATTCCGACGGTGCTCGGTCTGTGTAACGTGTAGCGTACGAAACTTGCTTGACATTTTTTTTCTTTGA

mRNA sequence

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Protein sequence

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MEEIGAKTAETQKDNYDGESDKNLRVGVALCGRAAYLGHIDALRELGHCLQDSYDVAENTSEGRRLLIEANARELESITNSSLRRFNCSGDRLSPTDSAGSLLSDYGCNI
PVLEAHPANQFLREWFASGRGFIAEGLRLCSNSGCGRPETRLHEFRRCSVCVTCSVRNLLDIFFL

Spg007231 (gene) of Sponge gourd (cylindrica) v1 genome