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Spg007293 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007293
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationscaffold9:48026710..48027659
RNA-Seq ExpressionSpg007293
SyntenySpg007293
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064677.1 chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo var. makuwa]1.1e-2175.76Show/hide
Query:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        SWYGEERPRWLGP+PYDYPKYL+GELPGDYGFDIAGLS+DPVAFQKYFN ++ L A+ A++  + A
Subjt:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

TYK19913.1 chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo var. makuwa]4.9e-2273.53Show/hide
Query:  LYSWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        ++SWYGEERPRWLGP+PYDYPKYL+GELPGDYGFDIAGLS+DPVAFQKYFN ++ L A+ A++  + A
Subjt:  LYSWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

XP_008453032.2 PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo]1.1e-2175.76Show/hide
Query:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        SWYGEERPRWLGP+PYDYPKYL+GELPGDYGFDIAGLS+DPVAFQKYFN ++ L A+ A++  + A
Subjt:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

XP_008453034.2 PREDICTED: chlorophyll a-b binding protein, chloroplastic isoform X3 [Cucumis melo]1.1e-2175.76Show/hide
Query:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        SWYGEERPRWLGP+PYDYPKYL+GELPGDYGFDIAGLS+DPVAFQKYFN ++ L A+ A++  + A
Subjt:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

XP_038898449.1 chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Benincasa hispida]1.1e-2175.76Show/hide
Query:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        SWYGEERPRWLGP+PYDYPKYL+GELPGDYGFDIAGLS+DPVAFQKYFN ++ L A+ A++  + A
Subjt:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

TrEMBL top hitse value%identityAlignment
A0A1S3BVA0 Chlorophyll a-b binding protein, chloroplastic5.2e-2275.76Show/hide
Query:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        SWYGEERPRWLGP+PYDYPKYL+GELPGDYGFDIAGLS+DPVAFQKYFN ++ L A+ A++  + A
Subjt:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

A0A1S3BWE1 Chlorophyll a-b binding protein, chloroplastic5.2e-2275.76Show/hide
Query:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        SWYGEERPRWLGP+PYDYPKYL+GELPGDYGFDIAGLS+DPVAFQKYFN ++ L A+ A++  + A
Subjt:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

A0A5A7VCG1 Chlorophyll a-b binding protein, chloroplastic5.2e-2275.76Show/hide
Query:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        SWYGEERPRWLGP+PYDYPKYL+GELPGDYGFDIAGLS+DPVAFQKYFN ++ L A+ A++  + A
Subjt:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

A0A5D3D8P8 Chlorophyll a-b binding protein, chloroplastic2.4e-2273.53Show/hide
Query:  LYSWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        ++SWYGEERPRWLGP+PYDYPKYL+GELPGDYGFDIAGLS+DPVAFQKYFN ++ L A+ A++  + A
Subjt:  LYSWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

A0A6J1CK83 Chlorophyll a-b binding protein, chloroplastic6.8e-2275.76Show/hide
Query:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        SWYGEERPRWLGPIPY+YPKYL+G+LPGDYGFDIAGLSKDPVAFQKYFN ++ L A+ A++  + A
Subjt:  SWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

SwissProt top hitse value%identityAlignment
P14278 Chlorophyll a-b binding protein 4, chloroplastic6.8e-1160Show/hide
Query:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK
        WYGE+RP++LGP     P YL+GE PGDYG+D AGLS DP  F +
Subjt:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK

P14279 Chlorophyll a-b binding protein 5, chloroplastic (Fragment)6.8e-1160Show/hide
Query:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK
        WYGE+RP++LGP     P YL+GE PGDYG+D AGLS DP  F +
Subjt:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK

P22686 Chlorophyll a-b binding protein of LHCII type I, chloroplastic1.1e-1160.87Show/hide
Query:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKY
        WYG +R +WLGP   + P YL+GE PGDYG+D AGLS DP  F+KY
Subjt:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKY

P27494 Chlorophyll a-b binding protein 36, chloroplastic6.8e-1160Show/hide
Query:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK
        WYGE+RP++LGP     P YL+GE PGDYG+D AGLS DP  F +
Subjt:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK

Q9C9K1 Chlorophyll a-b binding protein 7, chloroplastic2.8e-2066.15Show/hide
Query:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        WYG+ERPRW GPIPYDYP YL+GELPGDYGFDIAGL KD + F KYFN ++ L A+ A++  + A
Subjt:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

Arabidopsis top hitse value%identityAlignment
AT1G76570.1 Chlorophyll A-B binding family protein2.0e-2166.15Show/hide
Query:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA
        WYG+ERPRW GPIPYDYP YL+GELPGDYGFDIAGL KD + F KYFN ++ L A+ A++  + A
Subjt:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINA

AT2G05070.1 photosystem II light harvesting complex gene 2.21.1e-1160Show/hide
Query:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK
        WYG +RP++LGP   + P YL+GE PGDYG+D AGLS DP  F K
Subjt:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK

AT2G05100.1 photosystem II light harvesting complex gene 2.11.1e-1160Show/hide
Query:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK
        WYG +RP++LGP   + P YL+GE PGDYG+D AGLS DP  F K
Subjt:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK

AT3G27690.1 photosystem II light harvesting complex gene 2.31.1e-1160Show/hide
Query:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK
        WYG +RP++LGP   + P YL+GE PGDYG+D AGLS DP  F K
Subjt:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK

AT5G54270.1 light-harvesting chlorophyll B-binding protein 33.1e-1160Show/hide
Query:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK
        WYG +R ++LGP     P YL+GE PGDYG+D AGLS DP AF K
Subjt:  WYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAATCTTTACTTTCATGTAGAATTTATTCTCTACTCATGGTATGGAGAAGAGCGTCCTCGTTGGCTTGGTCCAATTCCATATGATTATCCAAAATATCTGTCAGG
TGAACTGCCGGGTGATTATGGATTCGATATTGCTGGTCTGAGCAAGGATCCCGTGGCTTTCCAGAAGTACTTCAACCATAAAGTAGCCCTAAAAGCACAGCTAGCCATAA
TGATGATTATCAATGCAGATAAGCTGGGAGAGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCAATCTTTACTTTCATGTAGAATTTATTCTCTACTCATGGTATGGAGAAGAGCGTCCTCGTTGGCTTGGTCCAATTCCATATGATTATCCAAAATATCTGTCAGG
TGAACTGCCGGGTGATTATGGATTCGATATTGCTGGTCTGAGCAAGGATCCCGTGGCTTTCCAGAAGTACTTCAACCATAAAGTAGCCCTAAAAGCACAGCTAGCCATAA
TGATGATTATCAATGCAGATAAGCTGGGAGAGTTGTGA
Protein sequenceShow/hide protein sequence
MCNLYFHVEFILYSWYGEERPRWLGPIPYDYPKYLSGELPGDYGFDIAGLSKDPVAFQKYFNHKVALKAQLAIMMIINADKLGEL