CuGenDBv2

Gene ID	Spg007313
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	scaffold2:37086247..37104362
RNA-Seq Expression	Spg007313
Synteny	Spg007313
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048153.1 reverse transcriptase [Cucumis melo var. makuwa]

2.3e-33

72.73

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Query:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKRSRSDQP
        +LR +P     +D+DSINN LHVPKG IT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKM REKLC+LEDGT ++KR      
Subjt:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKRSRSDQP

Query:  YSKYDLRVIHLLAKLLVGIIR
         SK+DLRVIH L KLLVGIIR
Subjt:  YSKYDLRVIHLLAKLLVGIIR

KAA0063387.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

5.1e-33

65.91

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Query:  HGSLASQNLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK
        H S    +LR +P     +D+DS+NN LHVP+G IT+ KAKKIQEAFT+HVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LED TE++K
Subjt:  HGSLASQNLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK

Query:  RSRSDQPYSKYDLRVIHLLAKLLVGIIRALVN
        R       SK+DLRVIH L KLLVG +R   N
Subjt:  RSRSDQPYSKYDLRVIHLLAKLLVGIIRALVN

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

2.1e-26

74.19

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Query:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK
        +LR +P     +D+DS+NN LHVP+G IT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++K
Subjt:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.3e-33

71.9

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Query:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKRSRSDQP
        +LR +P     +D+DS+NN LHVP+G IT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++KR      
Subjt:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKRSRSDQP

Query:  YSKYDLRVIHLLAKLLVGIIR
         SK+DLRVIH L KLLVGIIR
Subjt:  YSKYDLRVIHLLAKLLVGIIR

TYK11649.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.7e-26

73.4

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Query:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKR
        +LR +P     +D+DS+NN LHVP+G IT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++K+
Subjt:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TX19 Reverse transcriptase

1.1e-33

72.73

Show/hide

Query:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKRSRSDQP
        +LR +P     +D+DSINN LHVPKG IT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKM REKLC+LEDGT ++KR      
Subjt:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKRSRSDQP

Query:  YSKYDLRVIHLLAKLLVGIIR
         SK+DLRVIH L KLLVGIIR
Subjt:  YSKYDLRVIHLLAKLLVGIIR

A0A5A7V8R2 Transposon Ty3-I Gag-Pol polyprotein

2.5e-33

65.91

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Query:  HGSLASQNLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK
        H S    +LR +P     +D+DS+NN LHVP+G IT+ KAKKIQEAFT+HVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LED TE++K
Subjt:  HGSLASQNLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK

Query:  RSRSDQPYSKYDLRVIHLLAKLLVGIIRALVN
        R       SK+DLRVIH L KLLVG +R   N
Subjt:  RSRSDQPYSKYDLRVIHLLAKLLVGIIRALVN

A0A5D3BWE8 F15O4.13

1.0e-26

74.19

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Query:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK
        +LR +P     +D+DS+NN LHVP+G IT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++K
Subjt:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein

1.1e-33

71.9

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Query:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKRSRSDQP
        +LR +P     +D+DS+NN LHVP+G IT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++KR      
Subjt:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKRSRSDQP

Query:  YSKYDLRVIHLLAKLLVGIIR
         SK+DLRVIH L KLLVGIIR
Subjt:  YSKYDLRVIHLLAKLLVGIIR

A0A5D3CN32 Transposon Ty3-I Gag-Pol polyprotein

1.3e-26

73.4

Show/hide

Query:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKR
        +LR +P     +D+DS+NN LHVP+G IT+ KAKKIQEAFTLHVQKLANAQRE +NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++K+
Subjt:  NLRISP-----NDMDSINNPLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACTTTCAGAAGTCTTGGGAGGAGGATTAGGGCTCATGGCTTTCTCGTTGGACAACGCCTTGGAGTCGCTCATATGTTTCGCAGTATTGTAAATGTAGGATTGGAATT
CCCAATTCCGACAACCCTTAGAGTCTTCTCCACTATTCTCCAGGCCAAGAACAACTTGTGGGAGTCTATAAAGATAGGGAATGGGAAGGGAATGCTTGAAGGATCAAGCT
ATAGAGAAAGATATTCCATGCAAGGAGAAGCCCTAAGACACAAGACACATGGTAGTCTTGCAAGCCAAAATCTAAGGATAAGCCCGAATGATATGGATTCAATCAATAAT
CCATTGCATGTACCTAAAGGATCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACACTGCATGTTCAAAAGCTAGCAAATGCACAACGAGAGGCCGAGAA
TTTTGAACCCAAATTTTTATATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAGATGGCACGGAGGACAAAA
AAAGATCTAGGAGTGACCAACCTTATTCTAAGTATGATCTAAGAGTGATTCATCTTCTAGCTAAACTCTTGGTTGGAATCATTCGAGCCTTGGTCAACATCCTTTGGCCG
ACTCTAGAGTGTGGAAAGGTCCTTGTTACTAAATACAAAATGTCGCATGATGGAGAAGAAGTTCCGGAAGTGATAGATCCAAATGTGGCTATTCTTCAAGCAATTCAAGG
TATGTTGGAATTGATGAGGGAAGATAGGCAAGAAAGGAGGGCACAACAACAAAGGGAAGCACGACCATTCCAAGAAGATGAAGGAGTTCATAGTCAGCTCAGGATTAAGA
TCGAGTTACCTAGGTCATCACATGAAATAGTCAGTCTCGATACCCCCGCTCGCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTATCGAATACAAAGTGGACC
GTATCACATAGCGTTACCAGGATAAGATGTCTACATGCATTACCTGTCAGGGATTTAGCATACTGCTACCGCATCCGGCTGGCCAGGCGGGAGTTAGAAAACAGAGAGAA
GCTGGAAATTACCCAGAAATGCGATCGCATTTCTGGGAAGGCTAAATCCAAATGCGATCGCATTTCTGGGAAGGCTAAATCCAAATGCGACCGCATTTCTGGAAAAACAG
AGTTTAATTTGATCACTTATACTTTGCATGTTATGGCGAGGCTGCCTAAGGCACCCTATAACAACTATATGGTTATAGATTGCATGCTTGCTTTATCTATGTCGGATTCA
AGTCACAGAAATGTGCATAACGTTTCTTCTTCAAATCTGAGTTTCCAATTTAGTCCTCGTGGGATCGATACCCTTAGAATACTTCTAAGAGGAAAAGTTGGACGCATTTC
TGGGAAGGCAAAAATGAAATGCGACCGCATTTCTAGAAAAACAGAGGCCGTTCCGAGTCGCACGTGGTTCACACACGCACCAGAGATCATTTCTCATTTCCATTACTGGG
AGCCGAATAGAGGAGAAAGAGTGGAGACTTCAAGAAGACCATCAACTACGGGTGTGAGTTTGGTGCATGAGCGATCCGCCTGGGGTGAGGTATTGCCCCAACAAAATAAG
CAGGCTTTGCCCCAGCAAAATTCAGTGAGTTCTCTTGAGGCAATGATGAAAGAATATATGGCTCGTACAGATGCCGCAATTCAAAAGAAGAAGGTGGAGCTAATGAGCAT
TGAAGCCGATGATGAAATGAAGCTCAATGATCTGTGA

mRNA sequence

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Protein sequence

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MTFRSLGRRIRAHGFLVGQRLGVAHMFRSIVNVGLEFPIPTTLRVFSTILQAKNNLWESIKIGNGKGMLEGSSYRERYSMQGEALRHKTHGSLASQNLRISPNDMDSINN
PLHVPKGSITRSKAKKIQEAFTLHVQKLANAQREAENFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKRSRSDQPYSKYDLRVIHLLAKLLVGIIRALVNILWP
TLECGKVLVTKYKMSHDGEEVPEVIDPNVAILQAIQGMLELMREDRQERRAQQQREARPFQEDEGVHSQLRIKIELPRSSHEIVSLDTPARMSPTWTPWINTSVSNTKWT
VSHSVTRIRCLHALPVRDLAYCYRIRLARRELENREKLEITQKCDRISGKAKSKCDRISGKAKSKCDRISGKTEFNLITYTLHVMARLPKAPYNNYMVIDCMLALSMSDS
SHRNVHNVSSSNLSFQFSPRGIDTLRILLRGKVGRISGKAKMKCDRISRKTEAVPSRTWFTHAPEIISHFHYWEPNRGERVETSRRPSTTGVSLVHERSAWGEVLPQQNK
QALPQQNSVSSLEAMMKEYMARTDAAIQKKKVELMSIEADDEMKLNDL

Spg007313 (gene) of Sponge gourd (cylindrica) v1 genome