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Spg007342 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007342
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S25
Genome locationscaffold5:28302734..28305812
RNA-Seq ExpressionSpg007342
SyntenySpg007342
Gene Ontology termsGO:0006298 - mismatch repair (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0030983 - mismatched DNA binding (molecular function)
InterPro domainsIPR004977 - Ribosomal protein S25
IPR007695 - DNA mismatch repair protein MutS-like, N-terminal
IPR016151 - DNA mismatch repair protein MutS, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3435782.1 hypothetical protein FNV43_RR22874 [Rhamnella rubrinervis]4.2e-2982.42Show/hide
Query:  PKLLLRLRAKFSALY-PSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        P  L  L    ++ Y P  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSE PKYKLITPSILSDRLR+
Subjt:  PKLLLRLRAKFSALY-PSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

KAF5443938.1 hypothetical protein F2P56_036452, partial [Juglans regia]3.2e-2992.31Show/hide
Query:  ALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        +L P  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSE PKYKLITPSILSDRLR+
Subjt:  ALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

PPD81718.1 hypothetical protein GOBAR_DD21343 [Gossypium barbadense]7.2e-2979.35Show/hide
Query:  PAPKLLLRLRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        P P L+   +     L P  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PKYKLITPSILSDR+R+
Subjt:  PAPKLLLRLRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

TQE04382.1 hypothetical protein C1H46_010001 [Malus baccata]5.5e-2985.71Show/hide
Query:  LRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        L + F +L  + MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PKYKLITPSILSDRLR+
Subjt:  LRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

XP_022990471.1 40S ribosomal protein S25-2-like [Cucurbita maxima]3.8e-3062.5Show/hide
Query:  GYKVGVVKQIKIAAIKAHESNKLGPFATLEATQNLGELQPEFFIPAPKLLLRLRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK
        G K   + +I++ ++     N +GP     +      LQP+     P  LLR +   S L    MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK
Subjt:  GYKVGVVKQIKIAAIKAHESNKLGPFATLEATQNLGELQPEFFIPAPKLLLRLRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK

Query:  VNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        VNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+R+
Subjt:  VNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

TrEMBL top hitse value%identityAlignment
A0A498IJ67 40S ribosomal protein S254.6e-2998.61Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLR+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

A0A540N013 Uncharacterized protein2.7e-2985.71Show/hide
Query:  LRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        L + F +L  + MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PKYKLITPSILSDRLR+
Subjt:  LRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

A0A540NK56 40S ribosomal protein S253.5e-29100Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

A0A5N5H9J7 40S ribosomal protein S254.6e-2998.61Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLR+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

A0A6J1JN15 40S ribosomal protein S251.8e-3062.5Show/hide
Query:  GYKVGVVKQIKIAAIKAHESNKLGPFATLEATQNLGELQPEFFIPAPKLLLRLRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK
        G K   + +I++ ++     N +GP     +      LQP+     P  LLR +   S L    MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK
Subjt:  GYKVGVVKQIKIAAIKAHESNKLGPFATLEATQNLGELQPEFFIPAPKLLLRLRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK

Query:  VNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        VNNMVLFDQGTYDKLLSEVPKYKLITPSILSDR+R+
Subjt:  VNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

SwissProt top hitse value%identityAlignment
P46301 40S ribosomal protein S251.7e-2890.28Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLLSE PKYKLITPS+LSDRLR+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

Q8GYL5 40S ribosomal protein S25-31.5e-2993.06Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KLITPSILSDRLR+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

Q9SIK2 40S ribosomal protein S25-21.2e-2991.67Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDR+R+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

Q9SIW5 40S ribosomal protein S25-12.6e-2991.67Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SE PK+KLITPSILSDRLR+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

Q9T029 40S ribosomal protein S25-45.7e-2990.28Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDR+R+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

Arabidopsis top hitse value%identityAlignment
AT2G21580.1 Ribosomal protein S25 family protein8.2e-3191.67Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDR+R+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

AT2G21580.2 Ribosomal protein S25 family protein4.5e-2990.28Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KLITPSILSDR+R+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

AT4G34555.1 Ribosomal protein S25 family protein1.1e-3093.06Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KLITPSILSDRLR+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

AT4G39200.1 Ribosomal protein S25 family protein4.1e-3090.28Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDR+R+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV

AT4G39200.2 Ribosomal protein S25 family protein2.2e-2888.89Show/hide
Query:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV
        MAPKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KLITPSILSDR+R+
Subjt:  MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAATACACTCCTTTGGGCGTTGGAGCTACAAGTTGTGGACCTTAAGAGGAGATACCCTAATGTTCTTCTCATACGTGTTCTGGGTATTTATGCCCATTTGGATCA
TAATTTTATGTCTGCAAGTATACCCACGTTTAGATTGAATGTGCATGTGGGGAGGCTAGTTAGCGCAGGGTATAAGGTGGGTGTTGTCAAGCAAATCAAAATTGCTGCGA
TTAAGGCTCATGAGTCAAATAAGTTAGGCCCATTTGCAACATTGGAGGCAACCCAAAATTTAGGGGAGCTCCAGCCAGAGTTCTTCATCCCTGCACCAAAGCTTCTGCTT
CGTCTTCGAGCCAAATTCTCAGCGCTATACCCATCCAACATGGCACCGAAGAAGGATAAGGCTCCTCCCCCGTCCTCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAA
GAAGAAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTATTGTTCGATCAGGGAACCTATGATAAGCTTCTTTCAGAAGTTCCAAAGTACAAGCTTA
TCACTCCTTCCATCCTGTCTGACAGATTAAGGGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAATACACTCCTTTGGGCGTTGGAGCTACAAGTTGTGGACCTTAAGAGGAGATACCCTAATGTTCTTCTCATACGTGTTCTGGGTATTTATGCCCATTTGGATCA
TAATTTTATGTCTGCAAGTATACCCACGTTTAGATTGAATGTGCATGTGGGGAGGCTAGTTAGCGCAGGGTATAAGGTGGGTGTTGTCAAGCAAATCAAAATTGCTGCGA
TTAAGGCTCATGAGTCAAATAAGTTAGGCCCATTTGCAACATTGGAGGCAACCCAAAATTTAGGGGAGCTCCAGCCAGAGTTCTTCATCCCTGCACCAAAGCTTCTGCTT
CGTCTTCGAGCCAAATTCTCAGCGCTATACCCATCCAACATGGCACCGAAGAAGGATAAGGCTCCTCCCCCGTCCTCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAA
GAAGAAGAAATGGAGCAAGGGAAAGCAAAAGGAGAAGGTCAACAACATGGTATTGTTCGATCAGGGAACCTATGATAAGCTTCTTTCAGAAGTTCCAAAGTACAAGCTTA
TCACTCCTTCCATCCTGTCTGACAGATTAAGGGTATGA
Protein sequenceShow/hide protein sequence
MPNTLLWALELQVVDLKRRYPNVLLIRVLGIYAHLDHNFMSASIPTFRLNVHVGRLVSAGYKVGVVKQIKIAAIKAHESNKLGPFATLEATQNLGELQPEFFIPAPKLLL
RLRAKFSALYPSNMAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRV