; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg007370 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007370
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA repair protein XRCC2 homolog
Genome locationscaffold7:19817049..19819012
RNA-Seq ExpressionSpg007370
SyntenySpg007370
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0005657 - replication fork (cellular component)
GO:0033063 - Rad51B-Rad51C-Rad51D-XRCC2 complex (cellular component)
GO:0097159 - organic cyclic compound binding (molecular function)
GO:1901363 - heterocyclic compound binding (molecular function)
InterPro domainsIPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR030547 - DNA repair protein XRCC2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601640.1 DNA repair protein XRCC2-like protein, partial [Cucurbita argyrosperma subsp. sororia]1.0e-4770.25Show/hide
Query:  AAHSPNTGVVMALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGV
        A   PN GV MAL QWIDGDE+AAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI                 QAAVNCILPKE NG+
Subjt:  AAHSPNTGVVMALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGV

Query:  SYGGLECSVVFIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF
         YGGLECSVVFIDLDCRLDISRL+QVLKLRILE NG+G      N D + T+   RFF
Subjt:  SYGGLECSVVFIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF

KAG7032399.1 DNA repair protein XRCC2-like protein [Cucurbita argyrosperma subsp. argyrosperma]5.9e-5176.92Show/hide
Query:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV
        MAL QWIDGDE+AAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI                 QAAVNCILPKE NG+ YGGLECSVV
Subjt:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV

Query:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTSR
        FIDLDCRLDISRL+QVLKLRILE NG+G+LFV FNID + TSR
Subjt:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTSR

XP_022998340.1 DNA repair protein XRCC2 homolog isoform X3 [Cucurbita maxima]2.0e-4673.65Show/hide
Query:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV
        MAL QWIDGDESAAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI                 QAAVNCILPKE NG+ YGGLECSVV
Subjt:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV

Query:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF
        FIDLDCRLDISRLSQVLKLRILE NGNG      N D + T+   RFF
Subjt:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF

XP_023550059.1 DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo]8.8e-4773.65Show/hide
Query:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV
        MAL QWIDGDE+AAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI                 QAAVNCILPKE NG+ YGGLECSVV
Subjt:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV

Query:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF
        FIDLDCRLDISRLSQVLKLRILE NGNG L    N D + T+   RFF
Subjt:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF

XP_023550300.1 DNA repair protein XRCC2 homolog isoform X3 [Cucurbita pepo subsp. pepo]8.8e-4773.65Show/hide
Query:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV
        MAL QWIDGDE+AAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI                 QAAVNCILPKE NG+ YGGLECSVV
Subjt:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV

Query:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF
        FIDLDCRLDISRLSQVLKLRILE NGNG L    N D + T+   RFF
Subjt:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF

TrEMBL top hitse value%identityAlignment
A0A6J1DLP4 DNA repair protein XRCC2 homolog2.8e-4679.69Show/hide
Query:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV
        MALSQWI GDE+AAEMLARVLK+R SLFVPPLHR+PLR GNVVELVGPSGSAKTQILI                 QAAVNCILPKE NGV YGGLECSVV
Subjt:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV

Query:  FIDLDCRLDISRLSQVLKLRILEANGNG
        FIDLDCRLD+SRLSQVLKLRILEANGNG
Subjt:  FIDLDCRLDISRLSQVLKLRILEANGNG

A0A6J1GYJ6 DNA repair protein XRCC2 homolog isoform X35.2e-4571.62Show/hide
Query:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV
        MAL QWIDGDE+AAEML RV KERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI                 QAAVNCILPKE NG+ YGGLECSVV
Subjt:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV

Query:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF
        FIDLDCRLDISRLSQVLKLRILE NG+G      N D + T+   RFF
Subjt:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF

A0A6J1GZX5 DNA repair protein XRCC2 homolog isoform X15.2e-4571.62Show/hide
Query:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV
        MAL QWIDGDE+AAEML RV KERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI                 QAAVNCILPKE NG+ YGGLECSVV
Subjt:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV

Query:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF
        FIDLDCRLDISRLSQVLKLRILE NG+G      N D + T+   RFF
Subjt:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF

A0A6J1KC54 DNA repair protein XRCC2 homolog isoform X19.5e-4773.65Show/hide
Query:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV
        MAL QWIDGDESAAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI                 QAAVNCILPKE NG+ YGGLECSVV
Subjt:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV

Query:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF
        FIDLDCRLDISRLSQVLKLRILE NGNG      N D + T+   RFF
Subjt:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF

A0A6J1KC81 DNA repair protein XRCC2 homolog isoform X39.5e-4773.65Show/hide
Query:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV
        MAL QWIDGDESAAEML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILI                 QAAVNCILPKE NG+ YGGLECSVV
Subjt:  MALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVV

Query:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF
        FIDLDCRLDISRLSQVLKLRILE NGNG      N D + T+   RFF
Subjt:  FIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTS---RFF

SwissProt top hitse value%identityAlignment
O43543 DNA repair protein XRCC21.7e-0533.77Show/hide
Query:  ESAAEMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVF
        ES  E+LAR+     LKE   +LF     P+H      G+++E  GP G+ KT++L  HL                   CILPK     S GGLE  V+F
Subjt:  ESAAEMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVF

Query:  IDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTSRFF-TSCNSA
        ID D   D+ RL  +L+ R+ ++        S  I K    RFF   C+S+
Subjt:  IDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTSRFF-TSCNSA

Q682D3 DNA repair protein XRCC2 homolog4.9e-3258.4Show/hide
Query:  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLD
        WI GDE+A +ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILI                 QAA++CILPK  NG+ YGGL   V+F+DLD
Subjt:  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLD

Query:  CRLDISRLSQVLKLRILEAN--GNG
        CR D+ RLSQ+LK R+L+AN  GNG
Subjt:  CRLDISRLSQVLKLRILEAN--GNG

Q9CX47 DNA repair protein XRCC26.6e-0534.68Show/hide
Query:  ESAAEMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVF
        ES  E+LAR+     LKE   +LF     P+H      G++ E  GP G+ KT++L  HL                   CILPK     S GGL+  V+F
Subjt:  ESAAEMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVF

Query:  IDLDCRLDISRLSQVLKLRILEAN
        ID D   D+ RL  VL+ R+ +++
Subjt:  IDLDCRLDISRLSQVLKLRILEAN

Arabidopsis top hitse value%identityAlignment
AT5G64520.1 homolog of X-ray repair cross complementing 2 (XRCC2)3.5e-3358.4Show/hide
Query:  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLD
        WI GDE+A +ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILI                 QAA++CILPK  NG+ YGGL   V+F+DLD
Subjt:  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLD

Query:  CRLDISRLSQVLKLRILEAN--GNG
        CR D+ RLSQ+LK R+L+AN  GNG
Subjt:  CRLDISRLSQVLKLRILEAN--GNG

AT5G64520.2 homolog of X-ray repair cross complementing 2 (XRCC2)3.5e-3358.4Show/hide
Query:  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLD
        WI GDE+A +ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILI                 QAA++CILPK  NG+ YGGL   V+F+DLD
Subjt:  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLD

Query:  CRLDISRLSQVLKLRILEAN--GNG
        CR D+ RLSQ+LK R+L+AN  GNG
Subjt:  CRLDISRLSQVLKLRILEAN--GNG

AT5G64520.3 homolog of X-ray repair cross complementing 2 (XRCC2)3.5e-3358.4Show/hide
Query:  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLD
        WI GDE+A +ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILI                 QAA++CILPK  NG+ YGGL   V+F+DLD
Subjt:  WIDGDESAAEMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLD

Query:  CRLDISRLSQVLKLRILEAN--GNG
        CR D+ RLSQ+LK R+L+AN  GNG
Subjt:  CRLDISRLSQVLKLRILEAN--GNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACATCGTCGTTCCGACAAGGTGAAAGAGAAAGAAAGAACGAAGAAGAGACGGCGATATTTACAAGAAGAAAGCACACGGAGAAAGAAAGAACTGAGAAGAAAAAAAA
ACACATGACGATTCGTGTGACACCGAGCTCTGGCAAAGAAAGGGCGTTATTTCGGCAAGAAAAAAGCCGCTCAGCAGCCGCCGCTCACAGCCCAAACACGGGCGTTGTTA
TGGCGCTCAGCCAGTGGATCGACGGCGACGAGAGCGCGGCGGAGATGCTTGCCAGAGTCCTCAAAGAACGAACCTCCTTGTTTGTTCCGCCTCTCCACAGAGTTCCTCTC
CGCGTCGGCAATGTGGTCGAACTTGTTGGACCCTCTGGTTCTGCCAAGACACAGATATTAATCCAGCATTTGAGGACAATTTCTGTGCCACTAAAAGTAGACTGCTTCTA
TGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAAGAGGGGAATGGGGTGAGCTATGGAGGCTTGGAGTGTTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGATATCT
CAAGACTTTCACAAGTCCTGAAGCTTCGAATTTTGGAGGCGAATGGCAACGGTCAGCTATTTGTGTCATTTAATATTGATAAAATGTTAACATCAAGGTTCTTCACGAGC
TGCAATTCTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACATCGTCGTTCCGACAAGGTGAAAGAGAAAGAAAGAACGAAGAAGAGACGGCGATATTTACAAGAAGAAAGCACACGGAGAAAGAAAGAACTGAGAAGAAAAAAAA
ACACATGACGATTCGTGTGACACCGAGCTCTGGCAAAGAAAGGGCGTTATTTCGGCAAGAAAAAAGCCGCTCAGCAGCCGCCGCTCACAGCCCAAACACGGGCGTTGTTA
TGGCGCTCAGCCAGTGGATCGACGGCGACGAGAGCGCGGCGGAGATGCTTGCCAGAGTCCTCAAAGAACGAACCTCCTTGTTTGTTCCGCCTCTCCACAGAGTTCCTCTC
CGCGTCGGCAATGTGGTCGAACTTGTTGGACCCTCTGGTTCTGCCAAGACACAGATATTAATCCAGCATTTGAGGACAATTTCTGTGCCACTAAAAGTAGACTGCTTCTA
TGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAAGAGGGGAATGGGGTGAGCTATGGAGGCTTGGAGTGTTCAGTGGTGTTCATTGACTTGGATTGTCGTCTTGATATCT
CAAGACTTTCACAAGTCCTGAAGCTTCGAATTTTGGAGGCGAATGGCAACGGTCAGCTATTTGTGTCATTTAATATTGATAAAATGTTAACATCAAGGTTCTTCACGAGC
TGCAATTCTGCTTAA
Protein sequenceShow/hide protein sequence
MTSSFRQGERERKNEEETAIFTRRKHTEKERTEKKKKHMTIRVTPSSGKERALFRQEKSRSAAAAHSPNTGVVMALSQWIDGDESAAEMLARVLKERTSLFVPPLHRVPL
RVGNVVELVGPSGSAKTQILIQHLRTISVPLKVDCFYEQAAVNCILPKEGNGVSYGGLECSVVFIDLDCRLDISRLSQVLKLRILEANGNGQLFVSFNIDKMLTSRFFTS
CNSA