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Spg007382 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007382
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold7:20551239..20554554
RNA-Seq ExpressionSpg007382
SyntenySpg007382
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039052.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-0955Show/hide
Query:  IATVENLMLGKFISPSQQPN-ETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN
        I   EN ++ +  S S++ N ET  P++MSV+ TD  TSD RM E+EKKINML+K VEE+DYEI+SLK+ +ESR+A ES+
Subjt:  IATVENLMLGKFISPSQQPN-ETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN

KAA0043321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-0948.31Show/hide
Query:  RMTKSVQLEIATVENLMLGKFISPSQQPN-ETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN
        +++K  + E+   EN  + +  S S++ N E S P++MSVM+TD  TS++RMAE+EKK+NML+K VEE+D+EI+ LK+ +ESR+A ES+
Subjt:  RMTKSVQLEIATVENLMLGKFISPSQQPN-ETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN

KAA0050708.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-0959.09Show/hide
Query:  SPSQQPNETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN
        S    P ET  P++MSVM+T+  TS++RM ++EKKINML+K+VEE+DYEI+SLK+ +ESR+ATES+
Subjt:  SPSQQPNETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.7e-0952.5Show/hide
Query:  IATVENLMLGKFISPSQQPNETS-SPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN
        I   EN  + +  S S++ NE +  P++MSVM+TD  TS++RMAE+EKK+NML+K VEE+D+EI+SLK+ +ESR+A ES+
Subjt:  IATVENLMLGKFISPSQQPNETS-SPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN

TYK25824.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-0951.14Show/hide
Query:  MTKSVQLEIATVENLMLGKFISPSQQPNE-TSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN
        M+K  +  I   EN M+ +  S S+  +E    P+++ VM+TD  TSD+RMAE+EKKINML+K V+E+DYEI+SLK+ +ESR+ATES+
Subjt:  MTKSVQLEIATVENLMLGKFISPSQQPNE-TSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN

TrEMBL top hitse value%identityAlignment
A0A5A7T6D4 Ty3-gypsy retrotransposon protein6.0e-1055Show/hide
Query:  IATVENLMLGKFISPSQQPN-ETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN
        I   EN ++ +  S S++ N ET  P++MSV+ TD  TSD RM E+EKKINML+K VEE+DYEI+SLK+ +ESR+A ES+
Subjt:  IATVENLMLGKFISPSQQPN-ETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN

A0A5A7TP10 Ty3-gypsy retrotransposon protein7.8e-1048.31Show/hide
Query:  RMTKSVQLEIATVENLMLGKFISPSQQPN-ETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN
        +++K  + E+   EN  + +  S S++ N E S P++MSVM+TD  TS++RMAE+EKK+NML+K VEE+D+EI+ LK+ +ESR+A ES+
Subjt:  RMTKSVQLEIATVENLMLGKFISPSQQPN-ETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN

A0A5A7U601 Ty3-gypsy retrotransposon protein6.0e-1059.09Show/hide
Query:  SPSQQPNETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN
        S    P ET  P++MSVM+T+  TS++RM ++EKKINML+K+VEE+DYEI+SLK+ +ESR+ATES+
Subjt:  SPSQQPNETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN

A0A5A7U9H0 Ty3-gypsy retrotransposon protein2.3e-0952.5Show/hide
Query:  IATVENLMLGKFISPSQQPNETS-SPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN
        I   EN  + +  S S++ NE +  P++MSVM+TD  TS++RMAE+EKK+NML+K VEE+D+EI+SLK+ +ESR+A ES+
Subjt:  IATVENLMLGKFISPSQQPNETS-SPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN

A0A5D3DQH9 Ty3-gypsy retrotransposon protein1.3e-0951.14Show/hide
Query:  MTKSVQLEIATVENLMLGKFISPSQQPNE-TSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN
        M+K  +  I   EN M+ +  S S+  +E    P+++ VM+TD  TSD+RMAE+EKKINML+K V+E+DYEI+SLK+ +ESR+ATES+
Subjt:  MTKSVQLEIATVENLMLGKFISPSQQPNE-TSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAGACGCATGACAAAATCTGTTCAACTTGAAATTGCCACTGTAGAAAATCTGATGCTTGGCAAATTCATCTCTCCTTCTCAGCAACCAAATGAAACATCAAGTCC
TGACATGATGTCTGTTATGATGACTGATGCAAGAACTAGTGATGAACGAATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTTGAAGAGAAAGACTACG
AAATTTCCTCTCTCAAAAGCCAAATGGAGAGTCGGAATGCCACTGAATCAAACGATCAACCTCAAAGAAAGATGGATAATTTAGAGGTGAAATTGTTCAATGAAGTAAGC
AGTGACAAGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTTTCTGTTCTCATAAATACAAAAGTTCGACGTCTCACCCCCTCCACGTTAGCTTGCTCCAA
GATCGACGCGTCACTTGCTCCAAGTTTAATACCCTTCACCTTCAAAGGTTGGCAGTTGAAAACTTTGCTTCACTACAAATCTTGGCGGTTGAAGACTTTGCTTTCGCCTC
ATCTTCAAAATTTGGCGGTTGACGTTGCTTCATCTTCAAAGGCAAATCTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAA
TCACTGCAAATGAAGTTGATGACGACCGTTGTAGACGAATCTGGTGACCATCCCTACAGGAAACTACAGTCATCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGAGACGCATGACAAAATCTGTTCAACTTGAAATTGCCACTGTAGAAAATCTGATGCTTGGCAAATTCATCTCTCCTTCTCAGCAACCAAATGAAACATCAAGTCC
TGACATGATGTCTGTTATGATGACTGATGCAAGAACTAGTGATGAACGAATGGCTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTTGAAGAGAAAGACTACG
AAATTTCCTCTCTCAAAAGCCAAATGGAGAGTCGGAATGCCACTGAATCAAACGATCAACCTCAAAGAAAGATGGATAATTTAGAGGTGAAATTGTTCAATGAAGTAAGC
AGTGACAAGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTTTCTGTTCTCATAAATACAAAAGTTCGACGTCTCACCCCCTCCACGTTAGCTTGCTCCAA
GATCGACGCGTCACTTGCTCCAAGTTTAATACCCTTCACCTTCAAAGGTTGGCAGTTGAAAACTTTGCTTCACTACAAATCTTGGCGGTTGAAGACTTTGCTTTCGCCTC
ATCTTCAAAATTTGGCGGTTGACGTTGCTTCATCTTCAAAGGCAAATCTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAA
TCACTGCAAATGAAGTTGATGACGACCGTTGTAGACGAATCTGGTGACCATCCCTACAGGAAACTACAGTCATCAAAGTGA
Protein sequenceShow/hide protein sequence
MLRRMTKSVQLEIATVENLMLGKFISPSQQPNETSSPDMMSVMMTDARTSDERMAEVEKKINMLLKMVEEKDYEISSLKSQMESRNATESNDQPQRKMDNLEVKLFNEVS
SDKKLQSIVPSRMKRKFSVLINTKVRRLTPSTLACSKIDASLAPSLIPFTFKGWQLKTLLHYKSWRLKTLLSPHLQNLAVDVASSSKANLVTTPAGNYSHQSDWSRQVVK
SLQMKLMTTVVDESGDHPYRKLQSSK