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Spg007409 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007409
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold7:20042857..20047506
RNA-Seq ExpressionSpg007409
SyntenySpg007409
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.1e-0962.07Show/hide
Query:  DSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        D+  +VEIELPV DTLP SAESS         + EDDV WLH +FR K AGGPGGGVT
Subjt:  DSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.8e-1053.42Show/hide
Query:  DRTYYPPMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        D+T    ++     +D+  +VEIELPVPDTLPTSAES          +  DDV WLHA+FR K AGGPGGGVT
Subjt:  DRTYYPPMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-0948.78Show/hide
Query:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EEDDVRWLHAIFRTKLAGGPGGGV
        P++     +D+  +VEIELPVPDTLPTSAESS       + L                 EDDV WLHA+FR K AGGPGGGV
Subjt:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EEDDVRWLHAIFRTKLAGGPGGGV

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]6.7e-1055.22Show/hide
Query:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        P++     +D+  + EIELPVPDTL TSAESS         +  DDV WLHAIFR K+ GGPGGGVT
Subjt:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-0948.78Show/hide
Query:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EEDDVRWLHAIFRTKLAGGPGGGV
        P++     +D+  +VEIELPVPDTLPTSAESS       + L                 EDDV WLHA+FR K AGGPGGGV
Subjt:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EEDDVRWLHAIFRTKLAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase1.2e-0948.78Show/hide
Query:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EEDDVRWLHAIFRTKLAGGPGGGV
        P++     +D+  +VEIELPVPDTLPTSAESS       + L                 EDDV WLHA+FR K AGGPGGGV
Subjt:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EEDDVRWLHAIFRTKLAGGPGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein8.5e-1153.42Show/hide
Query:  DRTYYPPMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        D+T    ++     +D+  +VEIELPVPDTLPTSAES          +  DDV WLHA+FR K AGGPGGGVT
Subjt:  DRTYYPPMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT

A0A5D3BNX1 Zf-CCHC domain-containing protein3.2e-1055.22Show/hide
Query:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        P++     +D+  + EIELPVPDTL TSAESS         +  DDV WLHAIFR K+ GGPGGGVT
Subjt:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT

A0A5D3BSA6 Retrotrans_gag domain-containing protein5.5e-1062.07Show/hide
Query:  DSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        D+  +VEIELPV DTLP SAESS         + EDDV WLH +FR K AGGPGGGVT
Subjt:  DSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT

A0A5D3DX39 Reverse transcriptase1.2e-0948.78Show/hide
Query:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EEDDVRWLHAIFRTKLAGGPGGGV
        P++     +D+  +VEIELPVPDTLPTSAESS       + L                 EDDV WLHA+FR K AGGPGGGV
Subjt:  PMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSL----------------EEDDVRWLHAIFRTKLAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGGTATCACGAACAATTGTCTCCCAGGATAGGACGTATTACCCACCTATGAATGTAGC
ACTCCAATCACAGGACTCTCGAACACTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCAACGTTCCAAGAGGGTCAACGGGTATCGT
TAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTGCCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTACCCACCTATGAATGTAGCACTCCAATCACAGGACTCTCGAACACTGGTATCACGAACAATTGTCTCCCAGGATAGGACGTATTACCCACCTATGAATGTAGC
ACTCCAATCACAGGACTCTCGAACACTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCAACGTTCCAAGAGGGTCAACGGGTATCGT
TAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTTGCCTTTTAG
Protein sequenceShow/hide protein sequence
MDYPPMNVALQSQDSRTLVSRTIVSQDRTYYPPMNVALQSQDSRTLVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTVAF