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Spg007473 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007473
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationscaffold2:1884475..1889253
RNA-Seq ExpressionSpg007473
SyntenySpg007473
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063999.1 small nuclear ribonucleoprotein E-like [Cucumis melo var. makuwa]4.3e-2852.57Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDEHVRENDDQPAEDIIEIEFSLPLY
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKALG                                ENDD PAE IIEI+FSL LY
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDEHVRENDDQPAEDIIEIEFSLPLY

Query:  GAIAFTISFC-------LEL-----VWEDWTTMRKRNLEITQVRVVV--GHIWGQGIAPLRSRNP---MSSAFNW
        GAIAFT +FC       L+L     VWE+     + + E +Q +VVV  G   G G   L +R     MSSA NW
Subjt:  GAIAFTISFC-------LEL-----VWEDWTTMRKRNLEITQVRVVV--GHIWGQGIAPLRSRNP---MSSAFNW

KAF3452842.1 hypothetical protein FNV43_RR03275 [Rhamnella rubrinervis]2.5e-2860.45Show/hide
Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LG               +D+S+RRQ+  +DE
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE

Query:  HVRENDDQPAEDIIEIEFSLPLYGAIAFTISFCL
        HVRENDD     +  I     L+G  A  I +CL
Subjt:  HVRENDDQPAEDIIEIEFSLPLYGAIAFTISFCL

KAG6526457.1 hypothetical protein ZIOFF_016442 [Zingiber officinale]7.6e-2572.04Show/hide
Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDEHV
        MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEEVN+KK  KK LG              KED +QRRQ+  +DE+V
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDEHV

RAL43812.1 hypothetical protein DM860_014313 [Cuscuta australis]2.2e-2463.21Show/hide
Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV++KKK++K L             +++   S+R QY+++DE
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE

Query:  HVREND
        HVREN+
Subjt:  HVREND

THU55523.1 hypothetical protein C4D60_Mb11t07470 [Musa balbisiana]1.2e-2566.04Show/hide
Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRIIGFDEYMNLVL++AEE+N+KKK++K LG P  P         +EDS +RRQ+  +DE
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE

Query:  HVREND
        HVR ND
Subjt:  HVREND

TrEMBL top hitse value%identityAlignment
A0A0K9QUA8 Small nuclear ribonucleoprotein E7.7e-2391.94Show/hide
Query:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG
        MASTKVQRIMTQPIKARIQIWLFEQKD RIEGRIIGFDEYMNLVLDDAEEVN+KKK++K+LG
Subjt:  MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG

A0A328DD73 Small nuclear ribonucleoprotein E1.1e-2463.21Show/hide
Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV++KKK++K L             +++   S+R QY+++DE
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE

Query:  HVREND
        HVREN+
Subjt:  HVREND

A0A4S8I8U0 Small nuclear ribonucleoprotein E5.3e-2460.53Show/hide
Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD+AEE+N+KKK++K L   F           +EDS + RQ+ ++DE
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE

Query:  HVRENDDQPAEDII
        +VR ND  P  D +
Subjt:  HVRENDDQPAEDII

A0A4S8J2F1 Small nuclear ribonucleoprotein E5.7e-2666.04Show/hide
Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRIIGFDEYMNLVL++AEE+N+KKK++K LG P  P         +EDS +RRQ+  +DE
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDE

Query:  HVREND
        HVR ND
Subjt:  HVREND

A0A5A7VEN8 Small nuclear ribonucleoprotein E2.1e-2852.57Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDEHVRENDDQPAEDIIEIEFSLPLY
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKKALG                                ENDD PAE IIEI+FSL LY
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDEHVRENDDQPAEDIIEIEFSLPLY

Query:  GAIAFTISFC-------LEL-----VWEDWTTMRKRNLEITQVRVVV--GHIWGQGIAPLRSRNP---MSSAFNW
        GAIAFT +FC       L+L     VWE+     + + E +Q +VVV  G   G G   L +R     MSSA NW
Subjt:  GAIAFTISFC-------LEL-----VWEDWTTMRKRNLEITQVRVVV--GHIWGQGIAPLRSRNP---MSSAFNW

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E5.7e-1561.19Show/hide
Query:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG
        KVQ++M QPI         ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG

A4FUI2 Small nuclear ribonucleoprotein E5.7e-1561.19Show/hide
Query:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG
        KVQ++M QPI         ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG

P62303 Small nuclear ribonucleoprotein E5.7e-1561.19Show/hide
Query:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG
        KVQ++M QPI         ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG

P62304 Small nuclear ribonucleoprotein E5.7e-1561.19Show/hide
Query:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG
        KVQ++M QPI         ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG

P62305 Small nuclear ribonucleoprotein E5.7e-1561.19Show/hide
Query:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG
        KVQ++M QPI         ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.7e-2277.46Show/hide
Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+IKK ++K LG
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG

AT2G18740.2 Small nuclear ribonucleoprotein family protein1.7e-2277.46Show/hide
Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+IKK ++K LG
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG

AT4G30330.1 Small nuclear ribonucleoprotein family protein4.4e-2378.87Show/hide
Query:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG
        MASTKVQRIMTQPI         KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV+IKKK++K LG
Subjt:  MASTKVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCGATTAAAGCTCGTATTCAGATTTGGCTATTTGAACAAAAGGACCTTAGGATCGAAGGCCGAATTATTGGATT
TGATGAGTACATGAATTTGGTTCTTGATGATGCTGAGGAAGTTAATATTAAGAAAAAGAGTAAAAAGGCCCTTGGTATGCCTTTTCCTCCCTCATTTGCTGTTGCCTTCT
CTCTACTAAAGGAGGATTCTTCTCAAAGGAGACAATATTACGTTAATGATGAACACGTAAGGGAAAATGATGATCAACCTGCAGAAGACATTATTGAGATAGAGTTTTCA
CTTCCATTGTATGGCGCTATAGCTTTTACAATTAGCTTCTGTTTGGAGTTGGTGTGGGAAGATTGGACTACGATGCGAAAGAGAAATTTGGAGATAACCCAAGTGAGAGT
GGTGGTGGGACACATATGGGGTCAGGGAATCGCACCCCTCAGGTCACGTAACCCCATGTCCTCTGCTTTCAACTGGACCCTTCCGATTCTTTGGGAGGTCACTGATGCCC
TTTGCCCATGTGAGTTAGGAGTATGCTTTCACCAGAATGGGGTCCCAAATAGTACACTAGCAGCTAGAAAAGGTAAATGCCCCTTAAACTTTCTTTGTTGTGATGGAACG
GTACGAGCTGAGGGATATATTGATAGTGAAATTTCAGGTAGCACATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCGATTAAAGCTCGTATTCAGATTTGGCTATTTGAACAAAAGGACCTTAGGATCGAAGGCCGAATTATTGGATT
TGATGAGTACATGAATTTGGTTCTTGATGATGCTGAGGAAGTTAATATTAAGAAAAAGAGTAAAAAGGCCCTTGGTATGCCTTTTCCTCCCTCATTTGCTGTTGCCTTCT
CTCTACTAAAGGAGGATTCTTCTCAAAGGAGACAATATTACGTTAATGATGAACACGTAAGGGAAAATGATGATCAACCTGCAGAAGACATTATTGAGATAGAGTTTTCA
CTTCCATTGTATGGCGCTATAGCTTTTACAATTAGCTTCTGTTTGGAGTTGGTGTGGGAAGATTGGACTACGATGCGAAAGAGAAATTTGGAGATAACCCAAGTGAGAGT
GGTGGTGGGACACATATGGGGTCAGGGAATCGCACCCCTCAGGTCACGTAACCCCATGTCCTCTGCTTTCAACTGGACCCTTCCGATTCTTTGGGAGGTCACTGATGCCC
TTTGCCCATGTGAGTTAGGAGTATGCTTTCACCAGAATGGGGTCCCAAATAGTACACTAGCAGCTAGAAAAGGTAAATGCCCCTTAAACTTTCTTTGTTGTGATGGAACG
GTACGAGCTGAGGGATATATTGATAGTGAAATTTCAGGTAGCACATAG
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKALGMPFPPSFAVAFSLLKEDSSQRRQYYVNDEHVRENDDQPAEDIIEIEFS
LPLYGAIAFTISFCLELVWEDWTTMRKRNLEITQVRVVVGHIWGQGIAPLRSRNPMSSAFNWTLPILWEVTDALCPCELGVCFHQNGVPNSTLAARKGKCPLNFLCCDGT
VRAEGYIDSEISGST