; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg007509 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007509
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmediator of RNA polymerase II transcription subunit 30
Genome locationscaffold2:374597..379504
RNA-Seq ExpressionSpg007509
SyntenySpg007509
Gene Ontology termsGO:0016592 - mediator complex (cellular component)
InterPro domainsIPR034568 - Mediator of RNA polymerase II transcription subunit 30


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138044.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus]2.4e-9092.93Show/hide
Query:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEK  NVLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A TATS LTI SP+GPSSHSANGVVNGDASSESTSHHTD S GG
Subjt:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKA+AYE GTSGHASPADQSEIDKLEQHLSNL+KELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_008464424.1 PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]5.5e-9092.93Show/hide
Query:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEK   VLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A TATS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGG
Subjt:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKA+AYE GTS HASPADQSEIDKLEQHLSNL+KELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022134927.1 mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]1.7e-8386.36Show/hide
Query:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        ME+KP ++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS   TATSAL+I SPNGPS HS NGVVNGDASSEST+HH D SSGG
Subjt:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        G+GSGGALEEAR RY NSVLALRAILAAIP+SQ A+AYE GTSGHASPADQSEIDKLEQHL NL+KELV KNLH+KLLIDQLRDLVAD+STWQSPCSV
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_022921424.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata]2.3e-8890.4Show/hide
Query:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEKP NVL+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A T TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGG
Subjt:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKA+A+E GTSGHASPADQSEIDKLEQHLSNL+KEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

XP_038879540.1 mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]1.1e-8791.46Show/hide
Query:  MMEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSG
        MMEEKP NVLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+  TATS L I SPNGPSSHS NGVVNGDASSESTSHHTD SSG
Subjt:  MMEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSG

Query:  GGSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GGSGSGGALEEAR RYKNSVLALRAILAAIPNSQKA AYE GTSG  SPADQSEIDKLEQHLS+L+KELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GGSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

TrEMBL top hitse value%identityAlignment
A0A0A0LNW4 Uncharacterized protein1.2e-9092.93Show/hide
Query:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEK  NVLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A TATS LTI SP+GPSSHSANGVVNGDASSESTSHHTD S GG
Subjt:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKA+AYE GTSGHASPADQSEIDKLEQHLSNL+KELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A1S3CMZ7 mediator of RNA polymerase II transcription subunit 302.6e-9092.93Show/hide
Query:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEK   VLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A TATS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGG
Subjt:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKA+AYE GTS HASPADQSEIDKLEQHLSNL+KELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A5A7USU3 Mediator of RNA polymerase II transcription subunit 302.6e-9092.93Show/hide
Query:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEK   VLALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A TATS LTI SPNGPSSHSANGVVNGDASSESTSHHTD SSGG
Subjt:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKA+AYE GTS HASPADQSEIDKLEQHLSNL+KELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1E0F5 mediator of RNA polymerase II transcription subunit 301.1e-8890.4Show/hide
Query:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEKP NVL+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A T TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGG
Subjt:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKA+A+E GTSGHASPADQSEIDKLEQHLSNL+KEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

A0A6J1JFZ2 mediator of RNA polymerase II transcription subunit 301.1e-8890.4Show/hide
Query:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG
        MEEKP NVL+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSS+A T TS LTI SPN PSSHS NGVVNGDASSEST+HHTD SSGG
Subjt:  MEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGG

Query:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
        GSGSGGALEEAR RYKNSVLALRAILAAIPNSQKA+A+E GTSGHASPADQSEIDKLEQHLSNL+KEL+VKNLHIKLLIDQLR+LVADVSTWQSPCSV
Subjt:  GSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

SwissProt top hitse value%identityAlignment
Q9FMV4 Mediator of RNA polymerase II transcription subunit 306.8e-4356.15Show/hide
Query:  TTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALEEA
        TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LWST    +AT +SA T    NG +  SA+      A+ + TSHH++ + GGG G  G   L+EA
Subjt:  TTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALEEA

Query:  RARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
          RYKNSV +LRA+LAAIPNSQKA+A E   +G  SP  + EI+KLE+   +L+ E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  RARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Arabidopsis top hitse value%identityAlignment
AT5G63480.1 unknown protein4.8e-4456.15Show/hide
Query:  TTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALEEA
        TTQELA+EG K LEETIE+AFQI+ +MNDELCNP+LWST    +AT +SA T    NG +  SA+      A+ + TSHH++ + GGG G  G   L+EA
Subjt:  TTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATATSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGG--ALEEA

Query:  RARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV
          RYKNSV +LRA+LAAIPNSQKA+A E   +G  SP  + EI+KLE+   +L+ E+  KN+H+K LID+LR+L+AD+STWQSPCSV
Subjt:  RARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACATCACAAGTGTGCTTGGAATTGGGATTTTAGGAGAGAAGTTTCTTGCCCTTGATTCAAGCGGATTTCGAAGCGTTTACGAATTCGGAGCATTCTCGATTACAGC
AGCATCACAGAAGCTTCTGTTTTTCGTTTGGAAACATATGATGGAAGAGAAACCCGCTAATGTTTTGGCACTTCCCCAGACCACTCAAGAGCTTGCAGTGGAGGGCATCA
AGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCATCAGCAGCAACGGCT
ACTTCTGCTTTAACAATTGGCAGTCCAAATGGTCCATCTTCGCATTCCGCGAATGGGGTTGTAAACGGCGATGCAAGCTCCGAAAGCACTAGCCATCACACCGATGGTAG
CAGTGGCGGAGGCAGCGGCAGTGGGGGAGCCCTTGAAGAGGCTCGCGCTCGCTACAAGAATTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGA
AGGCAGAAGCATATGAACCGGGTACGAGTGGTCATGCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAAAAAGGAACTTGTGGTT
AAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCAGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAACATCACAAGTGTGCTTGGAATTGGGATTTTAGGAGAGAAGTTTCTTGCCCTTGATTCAAGCGGATTTCGAAGCGTTTACGAATTCGGAGCATTCTCGATTACAGC
AGCATCACAGAAGCTTCTGTTTTTCGTTTGGAAACATATGATGGAAGAGAAACCCGCTAATGTTTTGGCACTTCCCCAGACCACTCAAGAGCTTGCAGTGGAGGGCATCA
AGCATCTAGAGGAAACGATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCATCAGCAGCAACGGCT
ACTTCTGCTTTAACAATTGGCAGTCCAAATGGTCCATCTTCGCATTCCGCGAATGGGGTTGTAAACGGCGATGCAAGCTCCGAAAGCACTAGCCATCACACCGATGGTAG
CAGTGGCGGAGGCAGCGGCAGTGGGGGAGCCCTTGAAGAGGCTCGCGCTCGCTACAAGAATTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGA
AGGCAGAAGCATATGAACCGGGTACGAGTGGTCATGCATCGCCAGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAAAAAGGAACTTGTGGTT
AAGAACTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCAGTATGA
Protein sequenceShow/hide protein sequence
MNITSVLGIGILGEKFLALDSSGFRSVYEFGAFSITAASQKLLFFVWKHMMEEKPANVLALPQTTQELAVEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSSAATA
TSALTIGSPNGPSSHSANGVVNGDASSESTSHHTDGSSGGGSGSGGALEEARARYKNSVLALRAILAAIPNSQKAEAYEPGTSGHASPADQSEIDKLEQHLSNLKKELVV
KNLHIKLLIDQLRDLVADVSTWQSPCSV