CuGenDBv2

Gene ID	Spg007603
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING-type domain-containing protein
Genome location	scaffold2:1139360..1140815
RNA-Seq Expression	Spg007603
Synteny	Spg007603
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6589799.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-35

86.02

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHET LASNPSL+RSLL+EA   EDDKLDG A+EAKRRLDERLR+QRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS

XP_022921934.1 uncharacterized protein LOC111430042 isoform X1 [Cucurbita moschata]

4.0e-36

87.1

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSLL+EA   EDDKLDG A+EAKRRLDERLR+QRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS

XP_022921935.1 uncharacterized protein LOC111430042 isoform X2 [Cucurbita moschata]

4.0e-36

87.1

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSLL+EA   EDDKLDG A+EAKRRLDERLR+QRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS

XP_023515554.1 uncharacterized protein LOC111779678 [Cucurbita pepo subsp. pepo]

2.3e-36

89.25

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP VAAQ LTRRS+LCLYTSNHETLLASNPSL+RSLLVEA   EDDKLDG A+EAKRRLDERLR+QRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS

XP_038876903.1 uncharacterized protein LOC120069257 [Benincasa hispida]

9.5e-38

85.57

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGR
        MAGMLPGVECARRRRCHQNKVWSDSPP+AAQ LTRRS+LCLYTSNHE+LLASNPSLQRSLL+EA   ED++LDG A+EAKRRLD+RLR+QRKSEDGR
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C2J4 uncharacterized protein LOC111006855

1.3e-35

86.17

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSE
        MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSLL  A + EDDKLD IA+EAKRRLDERLR+QRKSE
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSE

A0A6J1E1Y4 uncharacterized protein LOC111430042 isoform X1

1.9e-36

87.1

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSLL+EA   EDDKLDG A+EAKRRLDERLR+QRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS

A0A6J1E765 uncharacterized protein LOC111430042 isoform X2

1.9e-36

87.1

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSLL+EA   EDDKLDG A+EAKRRLDERLR+QRKS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS

A0A6J1JLN2 uncharacterized protein LOC111485711 isoform X2

1.1e-34

84.95

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSLL+EA   EDDKL G A+EAKRRLDERLR+Q KS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS

A0A6J1JME7 uncharacterized protein LOC111485711 isoform X1

1.1e-34

84.95

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS
        MAGMLPGVECARRRRCHQNKVWSDSP +AAQ LTRRS+LCLYTSNHETLLASNPSL+RSLL+EA   EDDKL G A+EAKRRLDERLR+Q KS
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G15580.1 RING/U-box superfamily protein

1.1e-12

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPV-----------AAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQE-DDKLDGIAKEAKRRLDERLR
        MAGMLPGVECARRRR H       +PP+           A    TRR    LYT+NHE+  A     +RS+  ++  ++ D+KLDG AKEAK+RL++RLR
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPV-----------AAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQE-DDKLDGIAKEAKRRLDERLR

AT2G15580.2 RING/U-box superfamily protein

8.6e-13

43.12

Show/hide

Query:  MAGMLPGVECARRRRCHQNKVWSDSPPV-----------AAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQE-DDKLDGIAKEAKRRLDERLR
        MAGMLPGVECARRRR H       +PP+           A    TRR    LYT+NHE+  A     +RS+  ++  ++ D+KLDG AKEAK+RL++RLR
Subjt:  MAGMLPGVECARRRRCHQNKVWSDSPPV-----------AAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQE-DDKLDGIAKEAKRRLDERLR

Query:  SQRKSEDGR
           ++  G+
Subjt:  SQRKSEDGR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGGAATGCTTCCAGGTGTAGAGTGTGCTCGAAGAAGACGGTGTCATCAAAACAAAGTATGGTCAGATTCACCGCCCGTCGCCGCTCAGACCTTAACCAGGAGATC
CATTCTCTGCTTGTACACAAGCAACCACGAAACGCTCCTCGCTTCAAATCCCTCTCTGCAAAGAAGCCTGTTAGTTGAGGCACAACTACAAGAAGACGATAAACTGGACG
GAATTGCGAAAGAGGCGAAGAGGAGATTGGACGAGCGATTGAGATCGCAAAGGAAATCAGAGGATGGAAGGTACTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAGMLPGVECARRRRCHQNKVWSDSPPVAAQTLTRRSILCLYTSNHETLLASNPSLQRSLLVEAQLQEDDKLDGIAKEAKRRLDERLRSQRKSEDGRY

Spg007603 (gene) of Sponge gourd (cylindrica) v1 genome