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Spg007612 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007612
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationscaffold2:1583371..1584002
RNA-Seq ExpressionSpg007612
SyntenySpg007612
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]5.1e-3370.54Show/hide
Query:  MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRT--DDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESE
        MA+ DSS IFIG S VP PL N NNG KF  TSAKRT   D DS SSTQ N+ K PS  LRVSNPLLARSVVS    GF     YSGDWSRIGAITKE+E
Subjt:  MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRT--DDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESE

Query:  DLLKIGAFLVVPFCLFLIFSFSK-GTDSS
        DLLKIGA LVVPFC+FL+FSFSK  +DSS
Subjt:  DLLKIGAFLVVPFCLFLIFSFSK-GTDSS

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]9.4e-3571.54Show/hide
Query:  MAIADSSLIFIGVSAVPRPLFN---TNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKES
        MA+ DSS IFIG+SAVP PL N    NNG KF  TSAKRT D DSTSSTQ N+ K PS  LRVSNPLLARSVVS    GF     YSGDWSRIGAITKE+
Subjt:  MAIADSSLIFIGVSAVPRPLFN---TNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKES

Query:  EDLLKIGAFLVVPFCLFLIFSFSK-GTDSS
        E+LLKIGAFLVVPFC+FL+FSFSK  +DSS
Subjt:  EDLLKIGAFLVVPFCLFLIFSFSK-GTDSS

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]1.7e-3170.08Show/hide
Query:  MAIADSSLIFIGVSAVPRP-LFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESED
        M IADSS IF G+SA+P P L + NN  KF  TSAKRT D DS SSTQ   LK PS  LRV+NPLLARSVV+    GF     YSGDWSRIGAITKE+ED
Subjt:  MAIADSSLIFIGVSAVPRP-LFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESED

Query:  LLKIGAFLVVPFCLFLIFSFSKGTDSS
        LLKIGAFLVVPFC+FLIFSFS+ TDSS
Subjt:  LLKIGAFLVVPFCLFLIFSFSKGTDSS

XP_023004836.1 uncharacterized protein LOC111498016 [Cucurbita maxima]2.2e-3170.08Show/hide
Query:  MAIADSSLIFIGVSAVPRPL-FNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESED
        M IADSS IF G+SA+P PL  + NN  KF  TSAKRT D DS SSTQ   LK PS  LRVSNPLLARSVV+    GF     YSGDWSRIGAITKE+ED
Subjt:  MAIADSSLIFIGVSAVPRPL-FNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESED

Query:  LLKIGAFLVVPFCLFLIFSFSKGTDSS
         LKIGAFLVVPFC+FLIFSFS+ TDSS
Subjt:  LLKIGAFLVVPFCLFLIFSFSKGTDSS

XP_038879768.1 uncharacterized protein LOC120071517 [Benincasa hispida]5.3e-3066.93Show/hide
Query:  MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDL
        MA+ +SS IFIGVS VP PL N N+  KFR TSAK T+D DS S  ++++LK PS  LRVSNPLLARSVVS    GF     YSGDWSRIG ITKESE+L
Subjt:  MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDL

Query:  LKIGAFLVVPFCLFLIFSFSK-GTDSS
        LKIGAFLVVPFC+FL+FSFS+  +DSS
Subjt:  LKIGAFLVVPFCLFLIFSFSK-GTDSS

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein2.5e-3370.54Show/hide
Query:  MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRT--DDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESE
        MA+ DSS IFIG S VP PL N NNG KF  TSAKRT   D DS SSTQ N+ K PS  LRVSNPLLARSVVS    GF     YSGDWSRIGAITKE+E
Subjt:  MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRT--DDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESE

Query:  DLLKIGAFLVVPFCLFLIFSFSK-GTDSS
        DLLKIGA LVVPFC+FL+FSFSK  +DSS
Subjt:  DLLKIGAFLVVPFCLFLIFSFSK-GTDSS

A0A1S3B903 uncharacterized protein LOC1034873294.5e-3571.54Show/hide
Query:  MAIADSSLIFIGVSAVPRPLFN---TNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKES
        MA+ DSS IFIG+SAVP PL N    NNG KF  TSAKRT D DSTSSTQ N+ K PS  LRVSNPLLARSVVS    GF     YSGDWSRIGAITKE+
Subjt:  MAIADSSLIFIGVSAVPRPLFN---TNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKES

Query:  EDLLKIGAFLVVPFCLFLIFSFSK-GTDSS
        E+LLKIGAFLVVPFC+FL+FSFSK  +DSS
Subjt:  EDLLKIGAFLVVPFCLFLIFSFSK-GTDSS

A0A6J1C0R6 uncharacterized protein LOC1110073015.7e-3066.13Show/hide
Query:  IADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLK
        +ADS+ IF G SAV R LFN NN   FR   AKRTDD  +T S Q N+ + PS  LRV NPL+AR VVS    GF     YSGDWSRIGAITKESEDLLK
Subjt:  IADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESEDLLK

Query:  IGAFLVVPFCLFLIFSFSKGTDSS
        IGAFLVVPFC+FLI SF+K TDSS
Subjt:  IGAFLVVPFCLFLIFSFSKGTDSS

A0A6J1EZT4 uncharacterized protein LOC1114408618.0e-3270.08Show/hide
Query:  MAIADSSLIFIGVSAVPRP-LFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESED
        M IADSS IF G+SA+P P L + NN  KF  TSAKRT D DS SSTQ   LK PS  LRV+NPLLARSVV+    GF     YSGDWSRIGAITKE+ED
Subjt:  MAIADSSLIFIGVSAVPRP-LFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESED

Query:  LLKIGAFLVVPFCLFLIFSFSKGTDSS
        LLKIGAFLVVPFC+FLIFSFS+ TDSS
Subjt:  LLKIGAFLVVPFCLFLIFSFSKGTDSS

A0A6J1KT82 uncharacterized protein LOC1114980161.0e-3170.08Show/hide
Query:  MAIADSSLIFIGVSAVPRPL-FNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESED
        M IADSS IF G+SA+P PL  + NN  KF  TSAKRT D DS SSTQ   LK PS  LRVSNPLLARSVV+    GF     YSGDWSRIGAITKE+ED
Subjt:  MAIADSSLIFIGVSAVPRPL-FNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVS----GFHGMIRYSGDWSRIGAITKESED

Query:  LLKIGAFLVVPFCLFLIFSFSKGTDSS
         LKIGAFLVVPFC+FLIFSFS+ TDSS
Subjt:  LLKIGAFLVVPFCLFLIFSFSKGTDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein7.4e-1459.09Show/hide
Query:  PSLRLRVSNPLLARSVVSGFH-GMI--RYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFS
        P LR++V N ++ARS ++    G I   YSGDWSRIG I+KE+E+LLKI AFLVVP C+FL  SFS
Subjt:  PSLRLRVSNPLLARSVVSGFH-GMI--RYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATCGCAGATTCGAGTCTTATCTTCATCGGTGTCTCCGCCGTACCTCGTCCCCTTTTCAACACCAACAATGGCGGAAAATTCAGAGCCACATCGGCTAAAAGAAC
AGACGATTACGATTCCACTTCATCGACTCAAGCAAATCGGCTCAAAATTCCATCGCTGAGACTGAGAGTTTCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGGATTCC
ATGGAATGATTAGGTACAGTGGAGATTGGTCTAGAATTGGTGCGATTACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGCTTATTT
CTGATTTTTTCTTTCTCCAAAGGGACGGATTCTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATCGCAGATTCGAGTCTTATCTTCATCGGTGTCTCCGCCGTACCTCGTCCCCTTTTCAACACCAACAATGGCGGAAAATTCAGAGCCACATCGGCTAAAAGAAC
AGACGATTACGATTCCACTTCATCGACTCAAGCAAATCGGCTCAAAATTCCATCGCTGAGACTGAGAGTTTCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGGATTCC
ATGGAATGATTAGGTACAGTGGAGATTGGTCTAGAATTGGTGCGATTACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGCTTATTT
CTGATTTTTTCTTTCTCCAAAGGGACGGATTCTTCGTAA
Protein sequenceShow/hide protein sequence
MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVSGFHGMIRYSGDWSRIGAITKESEDLLKIGAFLVVPFCLF
LIFSFSKGTDSS