CuGenDBv2

Gene ID	Spg007657
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L39
Genome location	scaffold2:1225359..1226302
RNA-Seq Expression	Spg007657
Synteny	Spg007657
Gene Ontology terms	GO:0001732 - formation of cytoplasmic translation initiation complex (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0016282 - eukaryotic 43S preinitiation complex (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0033290 - eukaryotic 48S preinitiation complex (cellular component) GO:0071541 - eukaryotic translation initiation factor 3 complex, eIF3m (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR023626 - Ribosomal protein L39e domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAB4265840.1 unnamed protein product [Prunus armeniaca]

2.9e-11

83.67

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSI--LINLFSCV
        MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR     L NLF  V
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSI--LINLFSCV

CAB4296430.1 unnamed protein product [Prunus armeniaca]

2.9e-11

83.67

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSI--LINLFSCV
        MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR     L NLF  V
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSI--LINLFSCV

GAY45923.1 hypothetical protein CUMW_093070 [Citrus unshiu]

1.3e-11

83.72

Show/hide

Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSILINLF
        PSHKTF+IKKKLAKKMRQNRPIPHWIR+RTDNTIRSS ++  F
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSILINLF

KAB5513865.1 hypothetical protein DKX38_027771 [Salix brachista]

1.3e-11

68.33

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSILINLFSCVVRRKSLSSFLRLD
        MPSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIR S  ++LF C          L LD
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSILINLFSCVVRRKSLSSFLRLD

XP_020414429.1 60S ribosomal protein L39-1 [Prunus persica]

3.9e-11

100

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR

TrEMBL top hits

e value

%identity

Alignment

A0A2H5P0L9 Uncharacterized protein

6.4e-12

83.72

Show/hide

Query:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSILINLF
        PSHKTF+IKKKLAKKMRQNRPIPHWIR+RTDNTIRSS ++  F
Subjt:  PSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSILINLF

A0A5N5J8N4 Uncharacterized protein

6.4e-12

68.33

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSILINLFSCVVRRKSLSSFLRLD
        MPSHKTF IKKKLAKKMRQNRPIPHWIR+RTDNTIR S  ++LF C          L LD
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSILINLFSCVVRRKSLSSFLRLD

A0A6J5TP45 Uncharacterized protein

1.4e-11

83.67

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSI--LINLFSCV
        MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR     L NLF  V
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSI--LINLFSCV

A0A6J5W488 Uncharacterized protein

1.4e-11

83.67

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSI--LINLFSCV
        MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR     L NLF  V
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSI--LINLFSCV

A0A6P5T1X5 60S ribosomal protein L39-1

1.9e-11

100

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

9.5e-13

91.67

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIR
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR

P51425 60S ribosomal protein L39

2.8e-12

91.67

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR

P51426 60S ribosomal protein L39-2

2.8e-12

91.67

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR

Q5SMI4 60S ribosomal protein L39-3

2.8e-12

91.67

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR

Q6KAJ8 60S ribosomal protein L39-1

2.8e-12

91.67

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHKTF IKKKLAKKMRQNRPIP+WIR+RTDNTIR
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

1.3e-09

93.1

Show/hide

Query:  IIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        +IKKKL KKMRQNRPIPHWIRLRTDNTIR
Subjt:  IIKKKLAKKMRQNRPIPHWIRLRTDNTIR

AT3G02190.1 Ribosomal protein L39 family protein

2.2e-12

86.11

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHK+F+IKKKL KKMRQNRPIP+WIRLRTDN IR
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR

AT4G31985.1 Ribosomal protein L39 family protein

6.8e-14

91.67

Show/hide

Query:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR
        MPSHK+F+IKKKL KKMRQNRPIPHWIRLRTDNTIR
Subjt:  MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCGTCCCACAAAACCTTCATAATCAAGAAAAAGCTGGCGAAGAAGATGAGGCAGAACAGGCCCATTCCTCACTGGATTCGATTGAGAACTGACAACACGATAAGGAG
CAGTATATTGATTAATCTTTTCAGTTGCGTTGTTAGAAGGAAATCTCTGTCTTCTTTCTTGAGATTGGACTTTCAAGAAGGGCAATGA

mRNA sequence

Show/hide mRNA sequence

ATGCCGTCCCACAAAACCTTCATAATCAAGAAAAAGCTGGCGAAGAAGATGAGGCAGAACAGGCCCATTCCTCACTGGATTCGATTGAGAACTGACAACACGATAAGGAG
CAGTATATTGATTAATCTTTTCAGTTGCGTTGTTAGAAGGAAATCTCTGTCTTCTTTCTTGAGATTGGACTTTCAAGAAGGGCAATGA

Protein sequence

Show/hide protein sequence

MPSHKTFIIKKKLAKKMRQNRPIPHWIRLRTDNTIRSSILINLFSCVVRRKSLSSFLRLDFQEGQ

Spg007657 (gene) of Sponge gourd (cylindrica) v1 genome