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Spg007746 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007746
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:9385281..9385892
RNA-Seq ExpressionSpg007746
SyntenySpg007746
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]3.0e-0938.95Show/hide
Query:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTS-PKLVIEIDSVQVVHLLEEKDVDLT
        W  P ++CWKLN+D +W      G IGWIL    G  V AG   I++   ++ LE + ++ GL+ I + S   + +E DSV+V+ L++++DVDLT
Subjt:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTS-PKLVIEIDSVQVVHLLEEKDVDLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.5e-1331.29Show/hide
Query:  MVEVLHDPSSPQIWLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTSPKLV-IEIDSVQVVHLL
        ++  + D +  Q W  P+S+ WKLN++  W   T++G IGWILR + G  + A  R+I+    +++LE +A+ EGL++I     + + +E DS++ +HLL
Subjt:  MVEVLHDPSSPQIWLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTSPKLV-IEIDSVQVVHLL

Query:  EEKDVDLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKA
          +  D TE+   + E+  ++ + ++  + +IS   N + H L R+A
Subjt:  EEKDVDLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKA

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]8.6e-0937.93Show/hide
Query:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTSPKLV-IEIDSVQVVHLL
        W  P+S+ WKLN+D  W   T++  IGWILR + G  +  G R+I+    +++LE +A+ EGL++I     + + +E DS++ +HLL
Subjt:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTSPKLV-IEIDSVQVVHLL

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]6.8e-1432.57Show/hide
Query:  SERRHTRRPMVEVLHDPSSPQI-WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTS--PKLVI
        +E  +     + +LH   + ++ W  P    W LN+D +W   T  G IGWI+R  DG  V AG R ++    V  LEA A++EGL+++        L I
Subjt:  SERRHTRRPMVEVLHDPSSPQI-WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTS--PKLVI

Query:  EIDSVQVVHLLEEKDVDLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKACSLNSSNSCSDSFPWWL
        E DS +V  LL  K  DLT+ G  + E+  L  + ++   + +    N   H L ++A  L  S    D FP WL
Subjt:  EIDSVQVVHLLEEKDVDLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKACSLNSSNSCSDSFPWWL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]4.4e-1332.39Show/hide
Query:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSI------PLTSP---KLVIEIDSVQVVHLLEEKDV
        W  P+S+ WKLN+D  W   T++G IGWILR + G  + A  R+I+    +++LE +A+ EGL++I      P+       + +E DS++ +HLL  +  
Subjt:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSI------PLTSP---KLVIEIDSVQVVHLLEEKDV

Query:  DLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKA
        D TE+   + E+  ++ + ++  + +IS   N + H L R+A
Subjt:  DLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134127.3e-1431.29Show/hide
Query:  MVEVLHDPSSPQIWLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTSPKLV-IEIDSVQVVHLL
        ++  + D +  Q W  P+S+ WKLN++  W   T++G IGWILR + G  + A  R+I+    +++LE +A+ EGL++I     + + +E DS++ +HLL
Subjt:  MVEVLHDPSSPQIWLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTSPKLV-IEIDSVQVVHLL

Query:  EEKDVDLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKA
          +  D TE+   + E+  ++ + ++  + +IS   N + H L R+A
Subjt:  EEKDVDLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKA

A0A6J1CQG0 uncharacterized protein LOC1110132161.4e-0938.95Show/hide
Query:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTS-PKLVIEIDSVQVVHLLEEKDVDLT
        W  P ++CWKLN+D +W      G IGWIL    G  V AG   I++   ++ LE + ++ GL+ I + S   + +E DSV+V+ L++++DVDLT
Subjt:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTS-PKLVIEIDSVQVVHLLEEKDVDLT

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X14.2e-0937.93Show/hide
Query:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTSPKLV-IEIDSVQVVHLL
        W  P+S+ WKLN+D  W   T++  IGWILR + G  +  G R+I+    +++LE +A+ EGL++I     + + +E DS++ +HLL
Subjt:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTSPKLV-IEIDSVQVVHLL

A0A6J1DNV9 uncharacterized protein LOC1110224033.3e-1432.57Show/hide
Query:  SERRHTRRPMVEVLHDPSSPQI-WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTS--PKLVI
        +E  +     + +LH   + ++ W  P    W LN+D +W   T  G IGWI+R  DG  V AG R ++    V  LEA A++EGL+++        L I
Subjt:  SERRHTRRPMVEVLHDPSSPQI-WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTS--PKLVI

Query:  EIDSVQVVHLLEEKDVDLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKACSLNSSNSCSDSFPWWL
        E DS +V  LL  K  DLT+ G  + E+  L  + ++   + +    N   H L ++A  L  S    D FP WL
Subjt:  EIDSVQVVHLLEEKDVDLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKACSLNSSNSCSDSFPWWL

A0A6J1DSV1 uncharacterized protein LOC1110236082.1e-1332.39Show/hide
Query:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSI------PLTSP---KLVIEIDSVQVVHLLEEKDV
        W  P+S+ WKLN+D  W   T++G IGWILR + G  + A  R+I+    +++LE +A+ EGL++I      P+       + +E DS++ +HLL  +  
Subjt:  WLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSI------PLTSP---KLVIEIDSVQVVHLLEEKDV

Query:  DLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKA
        D TE+   + E+  ++ + ++  + +IS   N + H L R+A
Subjt:  DLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCGACAGCATCAGAGTTTGGCCCAGTACTGTCTTCTGAAAGACGGCACACTCGAAGGCCGATGGTTGAAGTGTTGCACGATCCAAGTTCCCCGCAGATATGGTT
GATGCCTTCGAGTGACTGTTGGAAGCTGAACAGTGATGTAACTTGGGACACGCGAACGAGTAGTGGCACGATTGGATGGATTCTCCGACGGCAAGATGGCATCCCTGTGA
CGGCTGGGTTCCGATTAATCAAGAAAAATTGGAGAGTTAGCTGGTTGGAAGCCCTAGCTCTGGTGGAAGGGTTGAAATCGATTCCATTAACGTCTCCCAAGCTGGTTATC
GAGATTGACTCAGTGCAAGTGGTACACCTGCTTGAGGAGAAAGACGTGGATCTTACAGAACTTGGCCTCTTCATCAATGAAGTGAAGTTTTTGCTTTCCAACCATCAAGT
TCACTTGATTTCCAATATATCCATGAGGCACAATAATATGACCCATCAGCTGCCCCGCAAGGCTTGCTCTCTTAATTCTTCAAATAGCTGTAGTGATTCTTTTCCCTGGT
GGCTTTTAGAGTTAAACAATGTAGACATTGGTGTTAATTCCATTTTTGGGGGTGCCTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGTCGACAGCATCAGAGTTTGGCCCAGTACTGTCTTCTGAAAGACGGCACACTCGAAGGCCGATGGTTGAAGTGTTGCACGATCCAAGTTCCCCGCAGATATGGTT
GATGCCTTCGAGTGACTGTTGGAAGCTGAACAGTGATGTAACTTGGGACACGCGAACGAGTAGTGGCACGATTGGATGGATTCTCCGACGGCAAGATGGCATCCCTGTGA
CGGCTGGGTTCCGATTAATCAAGAAAAATTGGAGAGTTAGCTGGTTGGAAGCCCTAGCTCTGGTGGAAGGGTTGAAATCGATTCCATTAACGTCTCCCAAGCTGGTTATC
GAGATTGACTCAGTGCAAGTGGTACACCTGCTTGAGGAGAAAGACGTGGATCTTACAGAACTTGGCCTCTTCATCAATGAAGTGAAGTTTTTGCTTTCCAACCATCAAGT
TCACTTGATTTCCAATATATCCATGAGGCACAATAATATGACCCATCAGCTGCCCCGCAAGGCTTGCTCTCTTAATTCTTCAAATAGCTGTAGTGATTCTTTTCCCTGGT
GGCTTTTAGAGTTAAACAATGTAGACATTGGTGTTAATTCCATTTTTGGGGGTGCCTGTTAG
Protein sequenceShow/hide protein sequence
MVSTASEFGPVLSSERRHTRRPMVEVLHDPSSPQIWLMPSSDCWKLNSDVTWDTRTSSGTIGWILRRQDGIPVTAGFRLIKKNWRVSWLEALALVEGLKSIPLTSPKLVI
EIDSVQVVHLLEEKDVDLTELGLFINEVKFLLSNHQVHLISNISMRHNNMTHQLPRKACSLNSSNSCSDSFPWWLLELNNVDIGVNSIFGGAC