; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg007837 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007837
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCoatomer subunit delta
Genome locationscaffold4:8223534..8231412
RNA-Seq ExpressionSpg007837
SyntenySpg007837
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0015031 - protein transport (biological process)
GO:0051645 - Golgi localization (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0030126 - COPI vesicle coat (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR027059 - Coatomer delta subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OAY65656.1 Coatomer subunit delta-2 [Ananas comosus]3.9e-3096.1Show/hide
Query:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSF
        LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIEALYLLLV NKQSNILEDL+TLRLLSKLVSF
Subjt:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSF

OWM83587.1 hypothetical protein CDL15_Pgr004016 [Punica granatum]2.3e-3091.46Show/hide
Query:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA
        VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIEALYLLLV NKQSNILEDLDTLRLLSKLV  + M+
Subjt:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA

XP_022926742.1 coatomer subunit delta-like [Cucurbita moschata]5.1e-3090.24Show/hide
Query:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA
        VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIEALYLLLV NKQSNILEDLDTLRLLSKLV  + ++
Subjt:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA

XP_022950547.1 coatomer subunit delta-like [Cucurbita moschata]5.1e-3090.24Show/hide
Query:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA
        VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIEALYLLLV NKQSNILEDLDTLRLLSKLV  + ++
Subjt:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA

XP_031391647.1 coatomer subunit delta-like [Punica granatum]2.3e-3091.46Show/hide
Query:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA
        VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIEALYLLLV NKQSNILEDLDTLRLLSKLV  + M+
Subjt:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA

TrEMBL top hitse value%identityAlignment
A0A0A9CWY3 Coatomer subunit delta1.4e-3093.59Show/hide
Query:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFF
        LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIE LYLLL+ NKQSNILEDLDTLRLLSKLVS+F
Subjt:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFF

A0A199ULT0 Coatomer subunit delta1.9e-3096.1Show/hide
Query:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSF
        LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIEALYLLLV NKQSNILEDL+TLRLLSKLVSF
Subjt:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSF

A0A218XF56 Coatomer subunit delta1.1e-3091.46Show/hide
Query:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA
        VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIEALYLLLV NKQSNILEDLDTLRLLSKLV  + M+
Subjt:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA

A0A2I0JSW9 Coatomer subunit delta1.1e-3091.46Show/hide
Query:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA
        VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIEALYLLLV NKQSNILEDLDTLRLLSKLV  + M+
Subjt:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA

A0A6J1IRH8 Coatomer subunit delta2.5e-3090.24Show/hide
Query:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA
        VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIEALYLLLV NKQSNILEDLDTLRLLSKLV  + ++
Subjt:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMA

SwissProt top hitse value%identityAlignment
P49661 Coatomer subunit delta-32.1e-3192Show/hide
Query:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLV
        LVSRQFVDMSRIRI+GLLAAFPKLVG+GKQHTYVET+NVRYVYQPIEALYLLL+ NKQSNILEDLDTLRLLSKL+
Subjt:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLV

Q0DJ99 Coatomer subunit delta-27.4e-3294.67Show/hide
Query:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLV
        LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIE LYLLL+ NKQSNILEDLDTLRLLSKLV
Subjt:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLV

Q0DJA0 Coatomer subunit delta-17.4e-3294.67Show/hide
Query:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLV
        LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVET+NVRYVYQPIE LYLLL+ NKQSNILEDLDTLRLLSKLV
Subjt:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLV

Q55EZ6 Coatomer subunit delta1.5e-2456.19Show/hide
Query:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMAYSYFSCSCISRELAKFSFS
        L+SRQF +M++ R+EGLLAAFPKL+G G+QHT++ET+N+RYVYQP+E+LY++L+ NK SNILEDL+TL LL+KLV      YS F    IS+   +  F+
Subjt:  LVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMAYSYFSCSCISRELAKFSFS

Query:  LSSVI
           VI
Subjt:  LSSVI

Q93Y22 Coatomer subunit delta2.2e-2873.68Show/hide
Query:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMAYSYFSCSCISREL
        V+VSR +VDMSRIRIEGLLAAFPKLVG GKQHTY+ET+NVRYVYQPIEAL+LLLV  KQSNILEDL TL LLSKLV  + M+      S  S EL
Subjt:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMAYSYFSCSCISREL

Arabidopsis top hitse value%identityAlignment
AT5G05010.1 clathrin adaptor complexes medium subunit family protein1.6e-2973.68Show/hide
Query:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMAYSYFSCSCISREL
        V+VSR +VDMSRIRIEGLLAAFPKLVG GKQHTY+ET+NVRYVYQPIEAL+LLLV  KQSNILEDL TL LLSKLV  + M+      S  S EL
Subjt:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMAYSYFSCSCISREL

AT5G05010.2 clathrin adaptor complexes medium subunit family protein1.6e-2973.68Show/hide
Query:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMAYSYFSCSCISREL
        V+VSR +VDMSRIRIEGLLAAFPKLVG GKQHTY+ET+NVRYVYQPIEAL+LLLV  KQSNILEDL TL LLSKLV  + M+      S  S EL
Subjt:  VLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMAYSYFSCSCISREL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTCCTGCATCTCAGCCATTCTTTCTTCCATAGTTCTTGTCTCAGTCATCATGACAGTCACTATGTCAGAATCAGGCTCGAACAAGGGGTTATACTTCACAAGAAA
CTTGCCATCAGTACATGCCTCCTGCAATGAGAACCCCTCTATTTATAGAGTTCTCGCTGAATGGGCCCTGGTGACTTTCGGGCCTAACAACTTGGGCTTGGGCTTTATCG
ATCTTGGGCTCAACCATTTTAGTCTTGGCCGTGAGGACCTTGTCTTCTTCAAGCGCCGGCCGTTCCCCGCTGTCCAAGTCTCCGGCGAGCAAGCTCCAGCAACTCCGGCG
TGTTCGTGCTGCGGTGGTCGTGGTTTCGGCGGCGACTTAAGGAGTGTGCAGACCGTGGGTCTGTTCGGTGCGATTTGGGTGAGATTTCAGCATGGTTTGGATGAATACCC
ATTGGTTTTGGCTATTGTTTTCAAGGTACCCATAGCGTTTGGAGGTTTAACCATCGATTTGGAGCGAAATTGGAACCCGAACAGCAAGTTTAAAGTTATGTTTTGCAGCC
GCCCCCCTCTCAATCTCGTTTCTCTCCTCTTCGTGAAGCTGCCAGCTGCCAGCCGCAGATCTCTTCCCCTTCTTCGTGCGATTCCAGCCGCGAGTCTCCCTTACCCTTCA
GTTTCTTCTTGCGCCGCCAGCACCCGTGGGCTTCATCTCCGTCGATCTCTCTCTCTCGTTCTTCCTCGCGTGACCAGCCTGCCGCCATCTCTCTCGTCATCGCGTGCGTC
GGCCAGCAACCTCAGTTTGGTTTTCTTGTGCACTCGCGGTGCTGGTTTGAGTTCTGTTCCGGCGTGTTCGGGCTCTCTTGTGCCGTCTTGGGTTCGAAATCATTCTTGCC
TTGTGACCCATCATCCGTTGAGCCTTAAACTTGAACAACCAGTGCCTAGGGTCTCTAAGCAAGTGGTTTTAAACCTCTTTGCTTGCTGGACAGCACGTGTTCGAGGTCTT
TCAGACGCTGAACGTTCGGGCTCCTTAGGCTCTACCGGTTCGTCTTGTTGGTTTTTAGGTTGCTTAGGAGCGCTTAAGGGTTGGTGTGATGAGTCTAGAAAGCAAGTGTT
GGGCGCCTGGGGAAGGGCCAATACTTTGCTAAGTCATCGGTGCGCCTTGGGTACAAATGGTCTAGGGGCGATGCACAGTTCGGGGCCTTGGGTACAAATGGTCAAGGGTC
GAACGCCGAGCTCCGTAGAGAGCATTGTGGCCCTGGGTACAAATGGTCAGGGGACAGTGCGACTCGAAGGATCAGTCTTGGAGAGCCATGTGAGGGCTAAATATGAGCGG
GCTGCTTACCAGTACCTTAGTGTCGATTCAATTGAGGAAGAAATTTATGAACCAGTTCTTGTTTCTAGACAGTTTGTCGATATGTCTCGAATCAGAATTGAGGGCCTTCT
TGCTGCTTTTCCAAAGTTGGTTGGAACTGGAAAGCAGCACACATATGTCGAGACAGACAATGTTCGCTATGTTTACCAGCCAATAGAAGCTTTATACTTGCTTCTTGTAA
TGAATAAACAGAGCAACATCCTTGAAGATTTGGACACTTTAAGGCTCCTTTCTAAGCTTGTATCCTTTTTTGACATGGCCTATAGCTATTTCTCGTGCTCTTGCATTTCA
AGAGAACTAGCAAAGTTTTCCTTTTCTCTATCCTCAGTTATAATATCTTCTGATCAGCAAACCACAATGGACTGTCTTATTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTCCTGCATCTCAGCCATTCTTTCTTCCATAGTTCTTGTCTCAGTCATCATGACAGTCACTATGTCAGAATCAGGCTCGAACAAGGGGTTATACTTCACAAGAAA
CTTGCCATCAGTACATGCCTCCTGCAATGAGAACCCCTCTATTTATAGAGTTCTCGCTGAATGGGCCCTGGTGACTTTCGGGCCTAACAACTTGGGCTTGGGCTTTATCG
ATCTTGGGCTCAACCATTTTAGTCTTGGCCGTGAGGACCTTGTCTTCTTCAAGCGCCGGCCGTTCCCCGCTGTCCAAGTCTCCGGCGAGCAAGCTCCAGCAACTCCGGCG
TGTTCGTGCTGCGGTGGTCGTGGTTTCGGCGGCGACTTAAGGAGTGTGCAGACCGTGGGTCTGTTCGGTGCGATTTGGGTGAGATTTCAGCATGGTTTGGATGAATACCC
ATTGGTTTTGGCTATTGTTTTCAAGGTACCCATAGCGTTTGGAGGTTTAACCATCGATTTGGAGCGAAATTGGAACCCGAACAGCAAGTTTAAAGTTATGTTTTGCAGCC
GCCCCCCTCTCAATCTCGTTTCTCTCCTCTTCGTGAAGCTGCCAGCTGCCAGCCGCAGATCTCTTCCCCTTCTTCGTGCGATTCCAGCCGCGAGTCTCCCTTACCCTTCA
GTTTCTTCTTGCGCCGCCAGCACCCGTGGGCTTCATCTCCGTCGATCTCTCTCTCTCGTTCTTCCTCGCGTGACCAGCCTGCCGCCATCTCTCTCGTCATCGCGTGCGTC
GGCCAGCAACCTCAGTTTGGTTTTCTTGTGCACTCGCGGTGCTGGTTTGAGTTCTGTTCCGGCGTGTTCGGGCTCTCTTGTGCCGTCTTGGGTTCGAAATCATTCTTGCC
TTGTGACCCATCATCCGTTGAGCCTTAAACTTGAACAACCAGTGCCTAGGGTCTCTAAGCAAGTGGTTTTAAACCTCTTTGCTTGCTGGACAGCACGTGTTCGAGGTCTT
TCAGACGCTGAACGTTCGGGCTCCTTAGGCTCTACCGGTTCGTCTTGTTGGTTTTTAGGTTGCTTAGGAGCGCTTAAGGGTTGGTGTGATGAGTCTAGAAAGCAAGTGTT
GGGCGCCTGGGGAAGGGCCAATACTTTGCTAAGTCATCGGTGCGCCTTGGGTACAAATGGTCTAGGGGCGATGCACAGTTCGGGGCCTTGGGTACAAATGGTCAAGGGTC
GAACGCCGAGCTCCGTAGAGAGCATTGTGGCCCTGGGTACAAATGGTCAGGGGACAGTGCGACTCGAAGGATCAGTCTTGGAGAGCCATGTGAGGGCTAAATATGAGCGG
GCTGCTTACCAGTACCTTAGTGTCGATTCAATTGAGGAAGAAATTTATGAACCAGTTCTTGTTTCTAGACAGTTTGTCGATATGTCTCGAATCAGAATTGAGGGCCTTCT
TGCTGCTTTTCCAAAGTTGGTTGGAACTGGAAAGCAGCACACATATGTCGAGACAGACAATGTTCGCTATGTTTACCAGCCAATAGAAGCTTTATACTTGCTTCTTGTAA
TGAATAAACAGAGCAACATCCTTGAAGATTTGGACACTTTAAGGCTCCTTTCTAAGCTTGTATCCTTTTTTGACATGGCCTATAGCTATTTCTCGTGCTCTTGCATTTCA
AGAGAACTAGCAAAGTTTTCCTTTTCTCTATCCTCAGTTATAATATCTTCTGATCAGCAAACCACAATGGACTGTCTTATTTTGTAG
Protein sequenceShow/hide protein sequence
MCSCISAILSSIVLVSVIMTVTMSESGSNKGLYFTRNLPSVHASCNENPSIYRVLAEWALVTFGPNNLGLGFIDLGLNHFSLGREDLVFFKRRPFPAVQVSGEQAPATPA
CSCCGGRGFGGDLRSVQTVGLFGAIWVRFQHGLDEYPLVLAIVFKVPIAFGGLTIDLERNWNPNSKFKVMFCSRPPLNLVSLLFVKLPAASRRSLPLLRAIPAASLPYPS
VSSCAASTRGLHLRRSLSLVLPRVTSLPPSLSSSRASASNLSLVFLCTRGAGLSSVPACSGSLVPSWVRNHSCLVTHHPLSLKLEQPVPRVSKQVVLNLFACWTARVRGL
SDAERSGSLGSTGSSCWFLGCLGALKGWCDESRKQVLGAWGRANTLLSHRCALGTNGLGAMHSSGPWVQMVKGRTPSSVESIVALGTNGQGTVRLEGSVLESHVRAKYER
AAYQYLSVDSIEEEIYEPVLVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETDNVRYVYQPIEALYLLLVMNKQSNILEDLDTLRLLSKLVSFFDMAYSYFSCSCIS
RELAKFSFSLSSVIISSDQQTTMDCLIL