; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg007859 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007859
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 2
Genome locationscaffold4:9064603..9067526
RNA-Seq ExpressionSpg007859
SyntenySpg007859
Gene Ontology termsGO:0009791 - post-embryonic development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR003656 - Zinc finger, BED-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589293.1 Zinc finger BED domain-containing protein RICESLEEPER 1, partial [Cucurbita argyrosperma subsp. sororia]8.4e-5366.84Show/hide
Query:  LRYSVLRCARSLFAAQSIASLVDVLQYTPPLFPLFLVTLPFSRRKISLTAVPPPSPERSARSTLSTHFCIGLERRILVKIVMELFVVTVVFCQADVMDMS
        LR+++    +SL   +SIASL+ VL YTP LFPLFL+ LPFSRR   LTAVP PSP +         F   LER                  Q DVMDMS
Subjt:  LRYSVLRCARSLFAAQSIASLVDVLQYTPPLFPLFLVTLPFSRRKISLTAVPPPSPERSARSTLSTHFCIGLERRILVKIVMELFVVTVVFCQADVMDMS

Query:  ETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKKDD
        E  IVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSN  IS   SSREK+KEATLAITNYVD GQKKDD
Subjt:  ETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKKDD

KAG7022990.1 Zinc finger BED domain-containing protein RICESLEEPER 1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-4750.36Show/hide
Query:  LRYSVLRCARSLFAAQSIASLVDVLQYTPPLFPLFLVTLPFSRRKISLTAVPPPSPERSAR-STLST------------------HFCIGLERRILVKIV
        LR+++    +SL   +SIASL+ VL YTP LFPLFL+ LPFSRR   LTAVP PSPE SA+ S+L T                     IG +  +  + V
Subjt:  LRYSVLRCARSLFAAQSIASLVDVLQYTPPLFPLFLVTLPFSRRKISLTAVPPPSPERSAR-STLST------------------HFCIGLERRILVKIV

Query:  MELF----VV--------TVVFC----------------------------------------------------QADVMDMSETAIVKSSRLKSVVWND
          +F    VV          +FC                                                    Q DVMDMSE  IVKSSRLKSVVWND
Subjt:  MELF----VV--------TVVFC----------------------------------------------------QADVMDMSETAIVKSSRLKSVVWND

Query:  FDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKKDD
        FDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSN  IS   SSREK+KEATLAITNYVD GQKKDD
Subjt:  FDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKKDD

XP_011657560.1 zinc finger BED domain-containing protein RICESLEEPER 1 isoform X1 [Cucumis sativus]2.9e-4592.38Show/hide
Query:  VVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQG
        +V  Q D MDMSE  IVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFI+SREKKKEATLAITNYVDQG
Subjt:  VVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQG

Query:  QKKDD
        QKKDD
Subjt:  QKKDD

XP_016900791.1 PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Cucumis melo]4.9e-4592.38Show/hide
Query:  VVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQG
        +V  QAD MDMSE  IVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFI+SREKKKEATLAITNYVD G
Subjt:  VVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQG

Query:  QKKDD
        QKKDD
Subjt:  QKKDD

XP_038888630.1 zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X1 [Benincasa hispida]1.3e-4592.38Show/hide
Query:  VVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQG
        +V  QAD MDMSE  IVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFI+SREKKKEATLAITNY+DQG
Subjt:  VVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQG

Query:  QKKDD
        QKKDD
Subjt:  QKKDD

TrEMBL top hitse value%identityAlignment
A0A0A0KES0 BED-type domain-containing protein1.4e-4592.38Show/hide
Query:  VVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQG
        +V  Q D MDMSE  IVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFI+SREKKKEATLAITNYVDQG
Subjt:  VVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQG

Query:  QKKDD
        QKKDD
Subjt:  QKKDD

A0A1S4DXS9 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X25.9e-4495.88Show/hide
Query:  MDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKKDD
        MDMSE  IVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFI+SREKKKEATLAITNYVD GQKKDD
Subjt:  MDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKKDD

A0A1S4DXT2 zinc finger BED domain-containing protein RICESLEEPER 1-like isoform X12.4e-4592.38Show/hide
Query:  VVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQG
        +V  QAD MDMSE  IVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFI+SREKKKEATLAITNYVD G
Subjt:  VVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQG

Query:  QKKDD
        QKKDD
Subjt:  QKKDD

A0A6J1GJY4 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X13.1e-4595Show/hide
Query:  ADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKKDD
        ADVMD+ E  IVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHG+SQFISSREKKKEATLAITNYVDQGQKKDD
Subjt:  ADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKKDD

A0A6J1HXH4 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X16.9e-4594Show/hide
Query:  ADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKKDD
        ADVMD+ E  IVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHG+SQFI+SREKKKEATLAITNYVDQGQKKDD
Subjt:  ADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKKDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCCTACCTTAAAGATGCCAGGTTCGAATTACAAGCAACAAAGAAGCAGTTGACGGGTATAATTGTAATTTTGATAATATTGCTTCGTTACTCTGTCCTCCGTTG
CGCGCGTTCTCTCTTCGCTGCACAATCAATCGCTTCCCTTGTCGATGTTTTACAGTACACACCGCCACTTTTCCCTCTCTTCCTCGTCACTCTCCCATTTTCTCGCCGGA
AAATCTCACTGACCGCCGTTCCTCCTCCGTCGCCGGAACGCTCTGCCCGGTCCACGCTATCCACTCACTTCTGTATCGGTTTGGAAAGGAGAATTTTGGTGAAGATTGTT
ATGGAACTATTTGTTGTTACTGTTGTTTTCTGTCAGGCTGATGTAATGGATATGTCGGAGACAGCTATAGTGAAATCTAGCAGATTGAAATCCGTTGTGTGGAACGATTT
TGATAGAATAAAAAAGGGTGACACCTTCGTCGCTGTATGTAGGCATTGTAAGAAGAAACTCAGTGGATCAAGTACCAGTGGGACTTCTCATTTGAGGAATCATTTGATTA
GGTGTCAGAGGAGATCTAATCATGGTATATCTCAATTCATTTCATCCAGGGAAAAGAAAAAGGAAGCAACGCTGGCTATTACCAACTATGTTGATCAGGGGCAGAAAAAG
GATGATCATTCTCCCAAAAATTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCCTACCTTAAAGATGCCAGGTTCGAATTACAAGCAACAAAGAAGCAGTTGACGGGTATAATTGTAATTTTGATAATATTGCTTCGTTACTCTGTCCTCCGTTG
CGCGCGTTCTCTCTTCGCTGCACAATCAATCGCTTCCCTTGTCGATGTTTTACAGTACACACCGCCACTTTTCCCTCTCTTCCTCGTCACTCTCCCATTTTCTCGCCGGA
AAATCTCACTGACCGCCGTTCCTCCTCCGTCGCCGGAACGCTCTGCCCGGTCCACGCTATCCACTCACTTCTGTATCGGTTTGGAAAGGAGAATTTTGGTGAAGATTGTT
ATGGAACTATTTGTTGTTACTGTTGTTTTCTGTCAGGCTGATGTAATGGATATGTCGGAGACAGCTATAGTGAAATCTAGCAGATTGAAATCCGTTGTGTGGAACGATTT
TGATAGAATAAAAAAGGGTGACACCTTCGTCGCTGTATGTAGGCATTGTAAGAAGAAACTCAGTGGATCAAGTACCAGTGGGACTTCTCATTTGAGGAATCATTTGATTA
GGTGTCAGAGGAGATCTAATCATGGTATATCTCAATTCATTTCATCCAGGGAAAAGAAAAAGGAAGCAACGCTGGCTATTACCAACTATGTTGATCAGGGGCAGAAAAAG
GATGATCATTCTCCCAAAAATTCGTGA
Protein sequenceShow/hide protein sequence
MLSYLKDARFELQATKKQLTGIIVILIILLRYSVLRCARSLFAAQSIASLVDVLQYTPPLFPLFLVTLPFSRRKISLTAVPPPSPERSARSTLSTHFCIGLERRILVKIV
MELFVVTVVFCQADVMDMSETAIVKSSRLKSVVWNDFDRIKKGDTFVAVCRHCKKKLSGSSTSGTSHLRNHLIRCQRRSNHGISQFISSREKKKEATLAITNYVDQGQKK
DDHSPKNS