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Spg007865 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007865
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold4:10028836..10032302
RNA-Seq ExpressionSpg007865
SyntenySpg007865
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]8.6e-0669.23Show/hide
Query:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFR
        TGES    DSI L F GQDR+GSWEH++TRWN LLP FR
Subjt:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFR
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-0467.74Show/hide
Query:  ISLPFWGQDRMGSWEHSHTRWNSLLPDFRVS
        + L  WGQD++GSWEH+H RWNSL+PDFR S
Subjt:  ISLPFWGQDRMGSWEHSHTRWNSLLPDFRVS
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]2.0e-0769.05Show/hide
Query:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFRVSP
        T ES   ADS+ L FWGQDR+ SWEH+HTRWNSLLP FR  P
Subjt:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFRVSP
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0771.79Show/hide
Query:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFR
        TGES    DSI L FWGQDR+GSWEH+HTRWNS +P FR
Subjt:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFR
TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]1.6e-0467.74Show/hide
Query:  ISLPFWGQDRMGSWEHSHTRWNSLLPDFRVS
        + L  WGQD++GSWEH+H RWNSL+PDFR S
Subjt:  ISLPFWGQDRMGSWEHSHTRWNSLLPDFRVS
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein7.8e-0567.74Show/hide
Query:  ISLPFWGQDRMGSWEHSHTRWNSLLPDFRVS
        + L  WGQD++GSWEH+H RWNSL+PDFR S
Subjt:  ISLPFWGQDRMGSWEHSHTRWNSLLPDFRVS
A0A5A7SPG1 Pol protein4.2e-0669.23Show/hide
Query:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFR
        TGES    DSI L F GQDR+GSWEH++TRWN LLP FR
Subjt:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFR
A0A5A7U2P4 Integrase catalytic domain-containing protein9.9e-0869.05Show/hide
Query:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFRVSP
        T ES   ADS+ L FWGQDR+ SWEH+HTRWNSLLP FR  P
Subjt:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFRVSP
A0A5D3C3J6 Gag/pol protein5.8e-0871.79Show/hide
Query:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFR
        TGES    DSI L FWGQDR+GSWEH+HTRWNS +P FR
Subjt:  TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFR
A0A5D3E3M6 Uncharacterized protein7.8e-0567.74Show/hide
Query:  ISLPFWGQDRMGSWEHSHTRWNSLLPDFRVS
        + L  WGQD++GSWEH+H RWNSL+PDFR S
Subjt:  ISLPFWGQDRMGSWEHSHTRWNSLLPDFRVS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACCCCCGTGAAAATGTCCATCGCCTCGACCGTGCGTACACTGGATCGAGGGACGGGGAGGTTGAGAAAGTATGTCAACCTCCGTGAGAATGGGCATCGACCCGA
CCGTGTGTACACTGGATCGGGGAATGGGGAGATTGAGAAAGATGCTCGGCCTCGGTCATTTCCCGAGGTGGAAGTCGCTCGGGCCTTCTTTTCAGTGCTCTTGAGCGCTG
CGAATTCGTGCAAGGCTCGCCTTCCCAGTATGGCGTTATATACGGGAATGCAGTCTACCACCAAGAAGTTGATCATTTTCGTAACCGATCGCAACCTCTTCCCAAAGGTT
ACTGGTGAGAGTGACCTGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAGTCACACAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGTAAGTCCATTAGGTCCCACCGGTAGCTCACTAAGGGCGTTGAGCAATAAAGGGACGTTCTTGCTGCTGGAATTTTCTGTCAATTCAAGAGATTTTGGTGAAT
CGATCAAGAACATCTTCAACGAAACGAGCTTCAGACGCAACAGCGTCGGGACGCTTGGCCTTGCACGTCCCGACGTTGTCGCGATTTCACCCAGCGAACGGTTGAAATCG
TGCCAGCGTCGGGACGCTATGCTTAAAGCGTCTCGATGCTGTCGCGATTTCGTGCGGGGGTTACGGAACACCTCCTACCTGGGAACTGACCTGGAGTACCGGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACCCCCGTGAAAATGTCCATCGCCTCGACCGTGCGTACACTGGATCGAGGGACGGGGAGGTTGAGAAAGTATGTCAACCTCCGTGAGAATGGGCATCGACCCGA
CCGTGTGTACACTGGATCGGGGAATGGGGAGATTGAGAAAGATGCTCGGCCTCGGTCATTTCCCGAGGTGGAAGTCGCTCGGGCCTTCTTTTCAGTGCTCTTGAGCGCTG
CGAATTCGTGCAAGGCTCGCCTTCCCAGTATGGCGTTATATACGGGAATGCAGTCTACCACCAAGAAGTTGATCATTTTCGTAACCGATCGCAACCTCTTCCCAAAGGTT
ACTGGTGAGAGTGACCTGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAGTCACACAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGTAAGTCCATTAGGTCCCACCGGTAGCTCACTAAGGGCGTTGAGCAATAAAGGGACGTTCTTGCTGCTGGAATTTTCTGTCAATTCAAGAGATTTTGGTGAAT
CGATCAAGAACATCTTCAACGAAACGAGCTTCAGACGCAACAGCGTCGGGACGCTTGGCCTTGCACGTCCCGACGTTGTCGCGATTTCACCCAGCGAACGGTTGAAATCG
TGCCAGCGTCGGGACGCTATGCTTAAAGCGTCTCGATGCTGTCGCGATTTCGTGCGGGGGTTACGGAACACCTCCTACCTGGGAACTGACCTGGAGTACCGGAGTTGA
Protein sequenceShow/hide protein sequence
MSTPVKMSIASTVRTLDRGTGRLRKYVNLRENGHRPDRVYTGSGNGEIEKDARPRSFPEVEVARAFFSVLLSAANSCKARLPSMALYTGMQSTTKKLIIFVTDRNLFPKV
TGESDLHADSISLPFWGQDRMGSWEHSHTRWNSLLPDFRVSPLGPTGSSLRALSNKGTFLLLEFSVNSRDFGESIKNIFNETSFRRNSVGTLGLARPDVVAISPSERLKS
CQRRDAMLKASRCCRDFVRGLRNTSYLGTDLEYRS