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Spg007904 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007904
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold5:23353516..23354001
RNA-Seq ExpressionSpg007904
SyntenySpg007904
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7055611.1 unnamed protein product [Microthlaspi erraticum]7.8e-0522.96Show/hide
Query:  LNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQ--SRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGW
        L  K + I P +LW+ W   N++    ++ NA    Q++ N   E  E +    +  +R   N+  +  +  W+ P    W+ + D +WS+ +   G+GW
Subjt:  LNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQ--SRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGW

Query:  VVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEAL
        ++ D   +++ +     +R  S    E +A+  A+
Subjt:  VVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEAL

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0644.83Show/hide
Query:  RLSADATWSEKRGIGGLGWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALKALI
        +L++ A+WSE+ G GG+ WV+HDS  S +C+   ++ R W +KMLE KA++E LK  +
Subjt:  RLSADATWSEKRGIGGLGWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALKALI

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]7.1e-0625.69Show/hide
Query:  LNPKDLNIGPIILWKTWSLCNK-------ISANNQDANAEYFFQ---DIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEK
        L+ +++    +I W+ W   N+       I     D +   F     D    + +   +  N     R G  +  +  V W  P  NCW+L+ DA+WSE+
Subjt:  LNPKDLNIGPIILWKTWSLCNK-------ISANNQDANAEYFFQ---DIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEK

Query:  RGIGGLGWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALK
        R +GG+GW++ D    +V     KI     +  LE   I+  L+
Subjt:  RGIGGLGWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALK

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]6.0e-0528.18Show/hide
Query:  GPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVP----WKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSE
        G ++LW  W+  N+I  +  +       Q     ++   E+ +    +   GNL+ +   +P    W  P  + W+L+ DATW +    GGLGW+V DSE
Subjt:  GPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVP----WKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSE

Query:  RSLV---CLR
           +   CL+
Subjt:  RSLV---CLR

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]9.2e-0627.86Show/hide
Query:  MEENLNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGL
        M +  + +DL++  I  W  W+  N +    + ++   F   IQ   K V E+   S  S  + + +   +++ W+ P  + W L+ADA+WS+    GG+
Subjt:  MEENLNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGL

Query:  GWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALKAL
        GW++   +  +V      +    ++K+LEA AILE L+ L
Subjt:  GWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALKAL

TrEMBL top hitse value%identityAlignment
A0A1J3C7A8 Putative ribonuclease H protein (Fragment)4.9e-0526.12Show/hide
Query:  KDLNIGPIILWKTWSLCNKISANNQDANAEYFF----QDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWV
        K+ N+GP ++W+ W   N +    ++ +A        +D++  VK  EE    S  S +  + S       WK P     + + D TWSE+    G+GWV
Subjt:  KDLNIGPIILWKTWSLCNKISANNQDANAEYFF----QDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWV

Query:  VHDSERSLVCLRMHKIYRNWSMKMLEAKAILEAL
        + DS   ++ +   K     S    E +A+  A+
Subjt:  VHDSERSLVCLRMHKIYRNWSMKMLEAKAILEAL

A0A6D2KM87 RNase H domain-containing protein3.8e-0522.96Show/hide
Query:  LNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQ--SRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGW
        L  K + I P +LW+ W   N++    ++ NA    Q++ N   E  E +    +  +R   N+  +  +  W+ P    W+ + D +WS+ +   G+GW
Subjt:  LNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQ--SRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGW

Query:  VVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEAL
        ++ D   +++ +     +R  S    E +A+  A+
Subjt:  VVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEAL

A0A6J1CQG0 uncharacterized protein LOC1110132163.4e-0625.69Show/hide
Query:  LNPKDLNIGPIILWKTWSLCNK-------ISANNQDANAEYFFQ---DIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEK
        L+ +++    +I W+ W   N+       I     D +   F     D    + +   +  N     R G  +  +  V W  P  NCW+L+ DA+WSE+
Subjt:  LNPKDLNIGPIILWKTWSLCNK-------ISANNQDANAEYFFQ---DIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEK

Query:  RGIGGLGWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALK
        R +GG+GW++ D    +V     KI     +  LE   I+  L+
Subjt:  RGIGGLGWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALK

A0A6J1D4B6 uncharacterized protein LOC1110171812.9e-0528.18Show/hide
Query:  GPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVP----WKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSE
        G ++LW  W+  N+I  +  +       Q     ++   E+ +    +   GNL+ +   +P    W  P  + W+L+ DATW +    GGLGW+V DSE
Subjt:  GPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVP----WKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSE

Query:  RSLV---CLR
           +   CL+
Subjt:  RSLV---CLR

A0A6J1DNV9 uncharacterized protein LOC1110224034.5e-0627.86Show/hide
Query:  MEENLNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGL
        M +  + +DL++  I  W  W+  N +    + ++   F   IQ   K V E+   S  S  + + +   +++ W+ P  + W L+ADA+WS+    GG+
Subjt:  MEENLNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGL

Query:  GWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALKAL
        GW++   +  +V      +    ++K+LEA AILE L+ L
Subjt:  GWVVHDSERSLVCLRMHKIYRNWSMKMLEAKAILEALKAL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0418.52Show/hide
Query:  ILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCLR
        ++W+ W   N +  N+     +   +   N  KE  +  + + Q     N +       W  P  +  + + DA+  E+  + GLGW++ +S+ +++   
Subjt:  ILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERSLVCLR

Query:  MHKIYRNWSMKMLEAKAILEALKALISTCNQRGVF
        M K     + +  E   ++ A++A     +++ +F
Subjt:  MHKIYRNWSMKMLEAKAILEALKALISTCNQRGVF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGAACCTTAACCCTAAGGATCTTAACATTGGACCTATCATTCTTTGGAAGACATGGTCCCTCTGCAACAAAATTTCAGCCAACAATCAAGACGCAAATGCTGA
GTACTTTTTCCAAGATATTCAGAACAGTGTAAAGGAAGTGGAAGAAGCGTACCTGAACAGCCATCAGTCGAGAAGAATTGGGAATCTCTCGAGTCAAGTTCACCAAGTCC
CCTGGAAAATCCCAAACCCGAATTGCTGGCGATTAAGCGCAGATGCAACCTGGAGTGAAAAGCGTGGAATCGGAGGTTTGGGCTGGGTTGTGCATGACTCGGAAAGATCC
CTCGTTTGTCTCAGAATGCATAAAATTTATCGAAATTGGTCAATGAAGATGTTGGAAGCGAAAGCTATTTTGGAAGCGCTAAAGGCGTTAATCAGTACCTGCAATCAAAG
GGGTGTGTTCCGCCTCTCTTTAATTTTGAAATATTTACAGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGAACCTTAACCCTAAGGATCTTAACATTGGACCTATCATTCTTTGGAAGACATGGTCCCTCTGCAACAAAATTTCAGCCAACAATCAAGACGCAAATGCTGA
GTACTTTTTCCAAGATATTCAGAACAGTGTAAAGGAAGTGGAAGAAGCGTACCTGAACAGCCATCAGTCGAGAAGAATTGGGAATCTCTCGAGTCAAGTTCACCAAGTCC
CCTGGAAAATCCCAAACCCGAATTGCTGGCGATTAAGCGCAGATGCAACCTGGAGTGAAAAGCGTGGAATCGGAGGTTTGGGCTGGGTTGTGCATGACTCGGAAAGATCC
CTCGTTTGTCTCAGAATGCATAAAATTTATCGAAATTGGTCAATGAAGATGTTGGAAGCGAAAGCTATTTTGGAAGCGCTAAAGGCGTTAATCAGTACCTGCAATCAAAG
GGGTGTGTTCCGCCTCTCTTTAATTTTGAAATATTTACAGCTTTAA
Protein sequenceShow/hide protein sequence
MEENLNPKDLNIGPIILWKTWSLCNKISANNQDANAEYFFQDIQNSVKEVEEAYLNSHQSRRIGNLSSQVHQVPWKIPNPNCWRLSADATWSEKRGIGGLGWVVHDSERS
LVCLRMHKIYRNWSMKMLEAKAILEALKALISTCNQRGVFRLSLILKYLQL