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Spg007907 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007907
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:23548707..23549625
RNA-Seq ExpressionSpg007907
SyntenySpg007907
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]3.0e-0968.63Show/hide
Query:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
        PRGNRP LQ  EL +    PL TLSVLRDND VVEIELP+PD LP+ A+SS
Subjt:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.0e-0970.59Show/hide
Query:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
        PRGNRPSLQ  EL +     L TLSVLRDND VVEIELPMPD LP+ A+SS
Subjt:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]8.9e-0968.63Show/hide
Query:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
        PRGNRPSLQ  EL +    PL TLSVLRDND VVEIELP P+ LP+ A+SS
Subjt:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.0e-0970.59Show/hide
Query:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
        PRGNRPSLQ  EL +     L TLSVLRDND VVEIELPMPD LP+ A+SS
Subjt:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.0e-0968.63Show/hide
Query:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
        PRGNRP LQ  EL +    PL TLSVLRDND VVEIELP+PD LP+ A+SS
Subjt:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.5e-0968.63Show/hide
Query:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
        PRGNRP LQ  EL +    PL TLSVLRDND VVEIELP+PD LP+ A+SS
Subjt:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
A0A5A7TKT0 Reverse transcriptase1.9e-0970.59Show/hide
Query:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
        PRGNRPSLQ  EL +     L TLSVLRDND VVEIELPMPD LP+ A+SS
Subjt:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
A0A5A7UFD2 Uncharacterized protein4.3e-0968.63Show/hide
Query:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
        PRGNRPSLQ  EL +    PL TLSVLRDND VVEIELP P+ LP+ A+SS
Subjt:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
A0A5D3D150 Reverse transcriptase1.9e-0970.59Show/hide
Query:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
        PRGNRPSLQ  EL +     L TLSVLRDND VVEIELPMPD LP+ A+SS
Subjt:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
A0A5D3DR18 Gag/pol protein1.5e-0968.63Show/hide
Query:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
        PRGNRP LQ  EL +    PL TLSVLRDND VVEIELP+PD LP+ A+SS
Subjt:  PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAAGAGGAAATAGGCCAAGTCTACAGGCCAGGGAACTAGCCCAATGCTGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTAGAGATCGA
GCTCCCGATGCCTGATAAACTACCATCGTTTGCTAAAAGCTCTTATAACAAATTC
mRNA sequenceShow/hide mRNA sequence
CCAAGAGGAAATAGGCCAAGTCTACAGGCCAGGGAACTAGCCCAATGCTGTTATATTCCATTGTTGACGTTGAGTGTACTCCGTGACAACGATGTTGTCGTAGAGATCGA
GCTCCCGATGCCTGATAAACTACCATCGTTTGCTAAAAGCTCTTATAACAAATTC
Protein sequenceShow/hide protein sequence
PRGNRPSLQARELAQCCYIPLLTLSVLRDNDVVVEIELPMPDKLPSFAKSSYNKF