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Spg007920 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007920
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:28573421..28578498
RNA-Seq ExpressionSpg007920
SyntenySpg007920
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.9e-2669Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESV  +                FNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-2265.98Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV------HDVP
        VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGV      H VP
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV------HDVP

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]7.4e-2658.96Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWLHAVFRAK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG

Query:  GPGGGVHDVPNPMIR--PSEGMVAP--GQPAGGS
        GPGGGV   P    R    +GM  P  GQ   GS
Subjt:  GPGGGVHDVPNPMIR--PSEGMVAP--GQPAGGS

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.8e-2359.83Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTWLELY+ESV  +  F               GS GIVRGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCW

Query:  LHAVFRAKLAGGPGGGV
        LHAVFRAK AGGP GGV
Subjt:  LHAVFRAKLAGGPGGGV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]7.4e-2658.96Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWLHAVFRAK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG

Query:  GPGGGVHDVPNPMIR--PSEGMVAP--GQPAGGS
        GPGGGV   P    R    +GM  P  GQ   GS
Subjt:  GPGGGVHDVPNPMIR--PSEGMVAP--GQPAGGS

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein9.4e-2769Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESV  +                FNVSVGSTGIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ--------------TRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPG

A0A5A7V9N3 Reverse transcriptase1.1e-2265.98Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV------HDVP
        VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVRGDDVCWLHAVFRAK  GGPGGGV      H VP
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV------HDVP

A0A5A7VMG9 Reverse transcriptase3.6e-2658.96Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWLHAVFRAK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG

Query:  GPGGGVHDVPNPMIR--PSEGMVAP--GQPAGGS
        GPGGGV   P    R    +GM  P  GQ   GS
Subjt:  GPGGGVHDVPNPMIR--PSEGMVAP--GQPAGGS

A0A5D3CCC7 DNA/RNA polymerases superfamily protein2.8e-2359.83Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTWLELY+ESV  +  F               GS GIVRGDDVCW
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVS-----------VGSTGIVRGDDVCW

Query:  LHAVFRAKLAGGPGGGV
        LHAVFRAK AGGP GGV
Subjt:  LHAVFRAKLAGGPGGGV

A0A5D3DX39 Reverse transcriptase3.6e-2658.96Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V  +  +       GIVR DDVCWLHAVFRAK AG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAG

Query:  GPGGGVHDVPNPMIR--PSEGMVAP--GQPAGGS
        GPGGGV   P    R    +GM  P  GQ   GS
Subjt:  GPGGGVHDVPNPMIR--PSEGMVAP--GQPAGGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTC
ACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGAGTTCACGATGTTCCGAATCCTATGATCAGGCCCTCTGAAGGGATGGTTGCGCCAGGACAACCTGCA
GGCGGATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTC
ACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGAGTTCACGATGTTCCGAATCCTATGATCAGGCCCTCTGAAGGGATGGTTGCGCCAGGACAACCTGCA
GGCGGATCATAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVHDVPNPMIRPSEGMVAPGQPA
GGS