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Spg007921 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007921
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:28542111..28543484
RNA-Seq ExpressionSpg007921
SyntenySpg007921
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]3.4e-2156.19Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLP SAESS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLEEDDVRWLHAIFRAKLAGGPG

Query:  GGVTT
          VTT
Subjt:  GGVTT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-1757.3Show/hide
Query:  VEIELPVPDTLPASAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLEEDDVRWLHAIFRAKLAGGPGGGVTT
        VEIELPVPDTLP SAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVTT
Subjt:  VEIELPVPDTLPASAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLEEDDVRWLHAIFRAKLAGGPGGGVTT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-2359.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLP SAESS ++SSTW+ELY+E VH+        E  W++  + EDDV WLHA+FRAK
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK

Query:  LAGGPGGGV
         AGGPGGGV
Subjt:  LAGGPGGGV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.4e-1951.69Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQWVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLP SAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQWVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGGVT
        LHA+FRAK AGGP GGVT
Subjt:  LHAIFRAKLAGGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-2359.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLP SAESS ++SSTW+ELY+E VH+        E  W++  + EDDV WLHA+FRAK
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK

Query:  LAGGPGGGV
         AGGPGGGV
Subjt:  LAGGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein1.6e-2156.19Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLP SAESS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLEEDDVRWLHAIFRAKLAGGPG

Query:  GGVTT
          VTT
Subjt:  GGVTT

A0A5A7V9N3 Reverse transcriptase5.0e-1857.3Show/hide
Query:  VEIELPVPDTLPASAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLEEDDVRWLHAIFRAKLAGGPGGGVTT
        VEIELPVPDTLP SAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGGVTT
Subjt:  VEIELPVPDTLPASAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQWVSLEEDDVRWLHAIFRAKLAGGPGGGVTT

A0A5A7VMG9 Reverse transcriptase1.3e-2359.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLP SAESS ++SSTW+ELY+E VH+        E  W++  + EDDV WLHA+FRAK
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK

Query:  LAGGPGGGV
         AGGPGGGV
Subjt:  LAGGPGGGV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein2.6e-1951.69Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQWVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLP SAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQWVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGGVT
        LHA+FRAK AGGP GGVT
Subjt:  LHAIFRAKLAGGPGGGVT

A0A5D3DX39 Reverse transcriptase1.3e-2359.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLP SAESS ++SSTW+ELY+E VH+        E  W++  + EDDV WLHA+FRAK
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVS--LEEDDVRWLHAIFRAK

Query:  LAGGPGGGV
         AGGPGGGV
Subjt:  LAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTCGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGTGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTCGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGTGGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPASAESSRTSSSTWVELYIESVHIVNVLFNVQEGQWVSLEEDDVRWLHAIFRAKLAGGPGGGVTT