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Spg007922 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007922
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:28760493..28762382
RNA-Seq ExpressionSpg007922
SyntenySpg007922
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004518 - nuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1565.85Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESFHI
        L TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ES H+
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESFHI

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1168.33Show/hide
Query:  YIALLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE
        YI+LLTLSVLRDN+ VV            SAGR PLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  YIALLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]7.4e-1968.18Show/hide
Query:  ALLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS
        +L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S
Subjt:  ALLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]7.4e-1968.18Show/hide
Query:  ALLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS
        +L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S
Subjt:  ALLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1565.85Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESFHI
        L TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ES H+
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESFHI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase6.3e-1665.85Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESFHI
        L TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ES H+
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESFHI

A0A5A7TCY8 DNA/RNA polymerases superfamily protein5.5e-1268.33Show/hide
Query:  YIALLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE
        YI+LLTLSVLRDN+ VV            SAGR PLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  YIALLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE

A0A5A7VGQ5 Uncharacterized protein3.6e-1968.18Show/hide
Query:  ALLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS
        +L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S
Subjt:  ALLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS

A0A5D3BG85 Uncharacterized protein3.6e-1968.18Show/hide
Query:  ALLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS
        +L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S
Subjt:  ALLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS

A0A5D3BTP3 Reverse transcriptase6.3e-1665.85Show/hide
Query:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESFHI
        L TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTW+ELY ES H+
Subjt:  LLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWVELYIESFHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTTGTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTTTGTTATATTGCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGT
ACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACA
TGGGTGGAGTTGTATATTGAGTCTTTCCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTTGTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGC
TCTATTTTGTTATATTGCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGT
ACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACA
TGGGTGGAGTTGTATATTGAGTCTTTCCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MVFEMENRAQDFRANQEDLWLSLVFRAFWGVQVESEALFCYIALLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSST
WVELYIESFHIVNVL