; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg007923 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007923
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:28994294..29010504
RNA-Seq ExpressionSpg007923
SyntenySpg007923
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-2346.35Show/hide
Query:  ESTGFSSKAGGSLVFSDVLSILGCKS------------------CIRS---------------SIW--------------PRGNRSSLQTGELAKTPEAI
        +STGFSSK GG LVFSD LSIL                      C+ S                +W              PRGNR SLQT E+ KT    
Subjt:  ESTGFSSKAGGSLVFSDVLSILGCKS------------------CIRS---------------SIW--------------PRGNRSSLQTGELAKTPEAI

Query:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI
                 PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLELY E VH+
Subjt:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.8e-3160.93Show/hide
Query:  STGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR
        ST FSSK G  LVFSD LSIL  +   +    +WPRGNRSSLQTGEL KT              L TLSVLRDNDAVVSAG            RAPLHRR
Subjt:  STGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR

Query:  TSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS
        TSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S
Subjt:  TSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS

KAA0066850.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.1e-2151.28Show/hide
Query:  TVESTGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAVVSAGRAPLH
        T+ STGFSSK GG LVFSD LSIL      +    IWPR NR SLQTGEL KT       E +  R    V T  I PL TLSVLRDNDAV         
Subjt:  TVESTGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAVVSAGRAPLH

Query:  RRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI
                             VEIELPVPDTLP+S ES  S+SSTWLELY EFVH+
Subjt:  RRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.8e-3160.93Show/hide
Query:  STGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR
        ST FSSK G  LVFSD LSIL  +   +    +WPRGNRSSLQTGEL KT              L TLSVLRDNDAVVSAG            RAPLHRR
Subjt:  STGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR

Query:  TSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS
        TSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S
Subjt:  TSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-2346.35Show/hide
Query:  ESTGFSSKAGGSLVFSDVLSILGCKS------------------CIRS---------------SIW--------------PRGNRSSLQTGELAKTPEAI
        +STGFSSK GG LVFSD LSIL                      C+ S                +W              PRGNR SLQT E+ KT    
Subjt:  ESTGFSSKAGGSLVFSDVLSILGCKS------------------CIRS---------------SIW--------------PRGNRSSLQTGELAKTPEAI

Query:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI
                 PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLELY E VH+
Subjt:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.4e-2346.35Show/hide
Query:  ESTGFSSKAGGSLVFSDVLSILGCKS------------------CIRS---------------SIW--------------PRGNRSSLQTGELAKTPEAI
        +STGFSSK GG LVFSD LSIL                      C+ S                +W              PRGNR SLQT E+ KT    
Subjt:  ESTGFSSKAGGSLVFSDVLSILGCKS------------------CIRS---------------SIW--------------PRGNRSSLQTGELAKTPEAI

Query:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI
                 PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLELY E VH+
Subjt:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI

A0A5A7VGQ5 Uncharacterized protein1.9e-3160.93Show/hide
Query:  STGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR
        ST FSSK G  LVFSD LSIL  +   +    +WPRGNRSSLQTGEL KT              L TLSVLRDNDAVVSAG            RAPLHRR
Subjt:  STGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR

Query:  TSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS
        TSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S
Subjt:  TSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein3.0e-2151.28Show/hide
Query:  TVESTGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAVVSAGRAPLH
        T+ STGFSSK GG LVFSD LSIL      +    IWPR NR SLQTGEL KT       E +  R    V T  I PL TLSVLRDNDAV         
Subjt:  TVESTGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKT------PEAIWYR----VHTGYI-PLLTLSVLRDNDAVVSAGRAPLH

Query:  RRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI
                             VEIELPVPDTLP+S ES  S+SSTWLELY EFVH+
Subjt:  RRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI

A0A5D3BG85 Uncharacterized protein1.9e-3160.93Show/hide
Query:  STGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR
        ST FSSK G  LVFSD LSIL  +   +    +WPRGNRSSLQTGEL KT              L TLSVLRDNDAVVSAG            RAPLHRR
Subjt:  STGFSSKAGGSLVFSDVLSILGCKSCIRS--SIWPRGNRSSLQTGELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR

Query:  TSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS
        TSKRWLYWACPT RRSVML          VEIEL VPDTLPTSAESS S+S
Subjt:  TSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTSAESSRSSS

A0A5D3BTP3 Reverse transcriptase2.4e-2346.35Show/hide
Query:  ESTGFSSKAGGSLVFSDVLSILGCKS------------------CIRS---------------SIW--------------PRGNRSSLQTGELAKTPEAI
        +STGFSSK GG LVFSD LSIL                      C+ S                +W              PRGNR SLQT E+ KT    
Subjt:  ESTGFSSKAGGSLVFSDVLSILGCKS------------------CIRS---------------SIW--------------PRGNRSSLQTGELAKTPEAI

Query:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI
                 PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAESSRS+SSTWLELY E VH+
Subjt:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGATTCACAGAACCCATCAGTTGTCGGATACGCAGACGAAGCTTCCCCCTCATCGCCAGAGGTTGAAGGACCGTTCAAAGATACCACTTCCTCCCCTAGTGAGGA
AAACAAGAGCCAAACCGAAGGGGAAACAAGACAAGATCCCACGGAAACCGAGGAAAACGAGCTCATCGACCTCGAGCAACCTCCCATCTCCACGATCAACCCACCAGAGG
GGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGGTCCATTAGGTCCCACTGGTAACTCGAAAAAGGTCTTGGCCTTT
ACTATATATAGGACCCCTGGGTGGGGTGAAAGGCATCCCATTCATTCTCCTACTCTCAAAGAATTCCCCTCGAGGCTTCCTCTGGACTCCCACCAGTCTCCTGCCTCTAG
AACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCC
CACTTTTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCACTCCCACAAGTCGTTCTTGGCCCGGAGAATAGTAGGGAAGACACTAGAGGTGGTCCACAC
ACCGTTCGTGATCAAAGGAATCAAAGGGAGTTGTTGAATCGGTCTCCAAAAGGGAGAATTTTCTCTCTAGAATTTTTCCCATTCAAGATTAGGCAGTCCCACAACTACGT
TCCTAATCTCAGAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCACGAATCATTCTTGAAGTATTCAGAGTCGTCAACGGAGTTGGGTG
GTCCGGTTCACGCGGTCTGGCTGGCCTGGGACCGATTTGGTCCGGTTCAGTTGGAATTTGGCTCGAACATGCATGCTTTAGGAGTAAAATTGAATGTCTTAAGTGCTTTC
GATCTTCAATTGCTTCCGCATGTCCTCATTTCACTCATTGCATGGCCGGTTCATTGCTTGGATGAGCGGTTCGGGATGGTTCGTGAAGCTCGGGCGTGCTGCAAGCGCCC
TGGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAATATCAAGGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAGAACGAAACGTGTCAAACGTATCCTGCGGTCT
CCATCATTAGGTTGCACCGTGAGATTCCTATGCGCTGCCTGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGATTCGGAACAACGCAAACTCCAG
AAATGGATAGGGTTTCCTAGGGCCATTCCCAACATTAGCTCTTCCCTACGGTGGCATTGTTGGGGCCGTCCTCTGCGATCTGAAAATGATGGATTGTCTCGATTCAGAGG
AGGAGTAGCTGACTGCCCTACGGTAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTAAAAGTTGCATCA
GAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGCTAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTG
ACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAG
ATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTTCG
TTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGATTCACAGAACCCATCAGTTGTCGGATACGCAGACGAAGCTTCCCCCTCATCGCCAGAGGTTGAAGGACCGTTCAAAGATACCACTTCCTCCCCTAGTGAGGA
AAACAAGAGCCAAACCGAAGGGGAAACAAGACAAGATCCCACGGAAACCGAGGAAAACGAGCTCATCGACCTCGAGCAACCTCCCATCTCCACGATCAACCCACCAGAGG
GGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGGGGTCCATTAGGTCCCACTGGTAACTCGAAAAAGGTCTTGGCCTTT
ACTATATATAGGACCCCTGGGTGGGGTGAAAGGCATCCCATTCATTCTCCTACTCTCAAAGAATTCCCCTCGAGGCTTCCTCTGGACTCCCACCAGTCTCCTGCCTCTAG
AACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCC
CACTTTTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCACTCCCACAAGTCGTTCTTGGCCCGGAGAATAGTAGGGAAGACACTAGAGGTGGTCCACAC
ACCGTTCGTGATCAAAGGAATCAAAGGGAGTTGTTGAATCGGTCTCCAAAAGGGAGAATTTTCTCTCTAGAATTTTTCCCATTCAAGATTAGGCAGTCCCACAACTACGT
TCCTAATCTCAGAGTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCACGAATCATTCTTGAAGTATTCAGAGTCGTCAACGGAGTTGGGTG
GTCCGGTTCACGCGGTCTGGCTGGCCTGGGACCGATTTGGTCCGGTTCAGTTGGAATTTGGCTCGAACATGCATGCTTTAGGAGTAAAATTGAATGTCTTAAGTGCTTTC
GATCTTCAATTGCTTCCGCATGTCCTCATTTCACTCATTGCATGGCCGGTTCATTGCTTGGATGAGCGGTTCGGGATGGTTCGTGAAGCTCGGGCGTGCTGCAAGCGCCC
TGGGAGCGTCCCCCTACGGATGGTGTTTGCATGGGTTAATATCAAGGTGAATGGGGAAAGTGTTCATAGTAAGTGGGAGAACGAAACGTGTCAAACGTATCCTGCGGTCT
CCATCATTAGGTTGCACCGTGAGATTCCTATGCGCTGCCTGCGAGTCGCCCTGGGAGCGATCACCCTACGGAGGGCTTGCGCATGGGATTCGGAACAACGCAAACTCCAG
AAATGGATAGGGTTTCCTAGGGCCATTCCCAACATTAGCTCTTCCCTACGGTGGCATTGTTGGGGCCGTCCTCTGCGATCTGAAAATGATGGATTGTCTCGATTCAGAGG
AGGAGTAGCTGACTGCCCTACGGTAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTAAAAGTTGCATCA
GAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGCTAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTG
ACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAG
ATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTTCG
TTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MSDSQNPSVVGYADEASPSSPEVEGPFKDTTSSPSEENKSQTEGETRQDPTETEENELIDLEQPPISTINPPEGQDRMGAGNITVQDGIHSFPYWGPLGPTGNSKKVLAF
TIYRTPGWGERHPIHSPTLKEFPSRLPLDSHQSPASRTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECPLGPPASSLPQVVLGPENSREDTRGGPH
TVRDQRNQRELLNRSPKGRIFSLEFFPFKIRQSHNYVPNLRVIAGKIKWWCSSLLQSNHESFLKYSESSTELGGPVHAVWLAWDRFGPVQLEFGSNMHALGVKLNVLSAF
DLQLLPHVLISLIAWPVHCLDERFGMVREARACCKRPGSVPLRMVFAWVNIKVNGESVHSKWENETCQTYPAVSIIRLHREIPMRCLRVALGAITLRRACAWDSEQRKLQ
KWIGFPRAIPNISSSLRWHCWGRPLRSENDGLSRFRGGVADCPTVESTGFSSKAGGSLVFSDVLSILGCKSCIRSSIWPRGNRSSLQTGELAKTPEAIWYRVHTGYIPLL
TLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTSAESSRSSSSTWLELYIEFVHIVNVL