; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg007927 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007927
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold7:28648175..28662861
RNA-Seq ExpressionSpg007927
SyntenySpg007927
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]6.0e-2651.15Show/hide
Query:  IKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSST----------WLELYIESLDVGSVQIELAE
        ++ PRGNR SLQTGELDKT   +          LLTL+VL DNDAIVEIELPV DTLP SAE S S+S +          WL +       G        
Subjt:  IKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSST----------WLELYIESLDVGSVQIELAE

Query:  YGPSVVESESRVMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK
         G  V      VMPPR+SRRRRQN D TQDP Q Q               SERFARSAQEIGRPE+AGPSDP+K
Subjt:  YGPSVVESESRVMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.7e-3357.8Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV---GSVQIELAE---YGPSVVE
        PRGNR SLQTGELDKT              L TLSVLRDND +VEIELP+PDTLPTSAE S S+SST LELY ES+ V   GSV I   +   +  +V  
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV---GSVQIELAE---YGPSVVE

Query:  SESR------VMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK
        +++       VMPPRTSRRRRQN DGTQDP Q Q               SERFARSAQEIGRPE+AGPSDP+K
Subjt:  SESR------VMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-3350.98Show/hide
Query:  LFGLSYPGGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIE--------------
        LFGL YP G KRPRGNR+SLQTGELDKT              L TLSVLRDNDA+VEIELPVPDTLPTSAE S S+SSTWLEL  E              
Subjt:  LFGLSYPGGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIE--------------

Query:  --------SLDVGSVQIELAE---------YGPSVVESESRVMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPS
                ++ VGS +I   +         +  +       VMPPRTSRRRRQN D  QDP Q Q               SERF RSAQEIGR ERA PS
Subjt:  --------SLDVGSVQIELAE---------YGPSVVESESRVMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPS

Query:  DPKK
        DP+K
Subjt:  DPKK

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]3.5e-2654.42Show/hide
Query:  VKEHFKERVKEEEEEEFRGLRLKKIGKSSCKPAIAGFEINLSTSGFLFGLSYPGGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDA
        + E+FKERVK EEEEEFRGLRLKK+ K      +      ++    L GLSYP G  RPRGNR SLQTG+LDKT              L TLSVLRDNDA
Subjt:  VKEHFKERVKEEEEEEFRGLRLKKIGKSSCKPAIAGFEINLSTSGFLFGLSYPGGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDA

Query:  I-----------VEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV
        +           VEIELP+PDTLPT AE   S+SSTWLELY ES+ V
Subjt:  I-----------VEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.7e-3357.8Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV---GSVQIELAE---YGPSVVE
        PRGNR SLQTGELDKT              L TLSVLRDND +VEIELP+PDTLPTSAE S S+SST LELY ES+ V   GSV I   +   +  +V  
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV---GSVQIELAE---YGPSVVE

Query:  SESR------VMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK
        +++       VMPPRTSRRRRQN DGTQDP Q Q               SERFARSAQEIGRPE+AGPSDP+K
Subjt:  SESR------VMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase4.2e-3357.8Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV---GSVQIELAE---YGPSVVE
        PRGNR SLQTGELDKT              L TLSVLRDND +VEIELP+PDTLPTSAE S S+SST LELY ES+ V   GSV I   +   +  +V  
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV---GSVQIELAE---YGPSVVE

Query:  SESR------VMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK
        +++       VMPPRTSRRRRQN DGTQDP Q Q               SERFARSAQEIGRPE+AGPSDP+K
Subjt:  SESR------VMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK

A0A5A7U9X4 DNA/RNA polymerases superfamily protein6.5e-3450.98Show/hide
Query:  LFGLSYPGGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIE--------------
        LFGL YP G KRPRGNR+SLQTGELDKT              L TLSVLRDNDA+VEIELPVPDTLPTSAE S S+SSTWLEL  E              
Subjt:  LFGLSYPGGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIE--------------

Query:  --------SLDVGSVQIELAE---------YGPSVVESESRVMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPS
                ++ VGS +I   +         +  +       VMPPRTSRRRRQN D  QDP Q Q               SERF RSAQEIGR ERA PS
Subjt:  --------SLDVGSVQIELAE---------YGPSVVESESRVMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPS

Query:  DPKK
        DP+K
Subjt:  DPKK

A0A5A7UGD0 Uncharacterized protein1.7e-2654.42Show/hide
Query:  VKEHFKERVKEEEEEEFRGLRLKKIGKSSCKPAIAGFEINLSTSGFLFGLSYPGGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDA
        + E+FKERVK EEEEEFRGLRLKK+ K      +      ++    L GLSYP G  RPRGNR SLQTG+LDKT              L TLSVLRDNDA
Subjt:  VKEHFKERVKEEEEEEFRGLRLKKIGKSSCKPAIAGFEINLSTSGFLFGLSYPGGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDA

Query:  I-----------VEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV
        +           VEIELP+PDTLPT AE   S+SSTWLELY ES+ V
Subjt:  I-----------VEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV

A0A5D3BSA6 Retrotrans_gag domain-containing protein2.9e-2651.15Show/hide
Query:  IKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSST----------WLELYIESLDVGSVQIELAE
        ++ PRGNR SLQTGELDKT   +          LLTL+VL DNDAIVEIELPV DTLP SAE S S+S +          WL +       G        
Subjt:  IKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSST----------WLELYIESLDVGSVQIELAE

Query:  YGPSVVESESRVMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK
         G  V      VMPPR+SRRRRQN D TQDP Q Q               SERFARSAQEIGRPE+AGPSDP+K
Subjt:  YGPSVVESESRVMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK

A0A5D3D150 Reverse transcriptase4.2e-3357.8Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV---GSVQIELAE---YGPSVVE
        PRGNR SLQTGELDKT              L TLSVLRDND +VEIELP+PDTLPTSAE S S+SST LELY ES+ V   GSV I   +   +  +V  
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIESLDV---GSVQIELAE---YGPSVVE

Query:  SESR------VMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK
        +++       VMPPRTSRRRRQN DGTQDP Q Q               SERFARSAQEIGRPE+AGPSDP+K
Subjt:  SESR------VMPPRTSRRRRQNHDGTQDPPQSQ---------------SERFARSAQEIGRPERAGPSDPKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAATTGATGAGGGAAGATAGGCAAGAAATGAGGGCACAACAACAAAGGGAAGTACGACCATTCCAAGAAGATGAAGGAATGTTTGACTTAGATGCACATGAAAG
ACAACTTGGAGGTAGAGGAAATTGTGCAGAATTTGTGAAGAGGTGGCTGTCCAACTTGCATCTCTTGGGATTTCGTGATGTCAAAGAGCACTTTAAGGAGAGAGTGAAGG
AGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAACCAGCCATTGCAGGATTTGAGATCAACCTGTCAACCTCTGGTTTTTTA
TTCGGTTTGAGCTACCCAGGAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACAC
AGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAACGTTCTAGAT
CAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCTTAGATGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTGTTGTTGAAAGTGAGTCCAGAGTC
ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCACGACGGGACGCAGGATCCTCCCCAGAGTCAATCAGAACGATTTGCTAGATCTGCACAGGAGATCGGTAGGCC
AGAGAGAGCAGGGCCTAGTGATCCGAAAAAGACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAATTGATGAGGGAAGATAGGCAAGAAATGAGGGCACAACAACAAAGGGAAGTACGACCATTCCAAGAAGATGAAGGAATGTTTGACTTAGATGCACATGAAAG
ACAACTTGGAGGTAGAGGAAATTGTGCAGAATTTGTGAAGAGGTGGCTGTCCAACTTGCATCTCTTGGGATTTCGTGATGTCAAAGAGCACTTTAAGGAGAGAGTGAAGG
AGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAACCAGCCATTGCAGGATTTGAGATCAACCTGTCAACCTCTGGTTTTTTA
TTCGGTTTGAGCTACCCAGGAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACAC
AGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAACGTTCTAGAT
CAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCTTAGATGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTGTTGTTGAAAGTGAGTCCAGAGTC
ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCACGACGGGACGCAGGATCCTCCCCAGAGTCAATCAGAACGATTTGCTAGATCTGCACAGGAGATCGGTAGGCC
AGAGAGAGCAGGGCCTAGTGATCCGAAAAAGACGTAG
Protein sequenceShow/hide protein sequence
MLELMREDRQEMRAQQQREVRPFQEDEGMFDLDAHERQLGGRGNCAEFVKRWLSNLHLLGFRDVKEHFKERVKEEEEEEFRGLRLKKIGKSSCKPAIAGFEINLSTSGFL
FGLSYPGGIKRPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPVPDTLPTSAERSRSSSSTWLELYIESLDVGSVQIELAEYGPSVVESESRV
MPPRTSRRRRQNHDGTQDPPQSQSERFARSAQEIGRPERAGPSDPKKT