; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg007933 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007933
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold7:29077163..29078664
RNA-Seq ExpressionSpg007933
SyntenySpg007933
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-2262.86Show/hide
Query:  TISGVYKLNQKLYLVSCRVFENEEFDGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI
        +I  V+K NQKLYL         + + PRGNR  LQTGELDK              PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTWLELY 
Subjt:  TISGVYKLNQKLYLVSCRVFENEEFDGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI

Query:  ESVHI
        ESVH+
Subjt:  ESVHI

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]8.1e-2758.33Show/hide
Query:  TISGVYKLNQKLYLVSCRVFENEEF---------------------------DGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEI
        +I  +YKLNQKLYLVSC VFENEEF                           + PRGNR SLQTGELDKT             PLSTLSVLRDNDAVVEI
Subjt:  TISGVYKLNQKLYLVSCRVFENEEF---------------------------DGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEI

Query:  ELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        ELP P+ LPTSAESSRS+SSTWLELY E VH+
Subjt:  ELPVPDTLPTSAESSRSSSSTWLELYIESVHI

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]7.9e-2264.15Show/hide
Query:  TISGVYKLNQKLYLVSCRVFENEEFDGP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELY
        +I  V+K NQKLYL      ++ ++D   RGNRSSLQ+GELD T             PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY
Subjt:  TISGVYKLNQKLYLVSCRVFENEEFDGP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELY

Query:  IESVHI
         ESVH+
Subjt:  IESVHI

KAA0062674.1 uncharacterized protein E6C27_scaffold79G001940 [Cucumis melo var. makuwa]4.2e-2353.79Show/hide
Query:  TISGVYKLNQKLYLVSCRVFENEEF---------------------------DGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEI
        +I  V++ NQ LYLVSCRVF +E+F                           + PRGNR SLQTG+LDKT             PLS LSVLRDND VVEI
Subjt:  TISGVYKLNQKLYLVSCRVFENEEF---------------------------DGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEI

Query:  ELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        ELPVPDT PTS ESS S+SSTWLELYIESVH+
Subjt:  ELPVPDTLPTSAESSRSSSSTWLELYIESVHI

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-2262.86Show/hide
Query:  TISGVYKLNQKLYLVSCRVFENEEFDGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI
        +I  V+K NQKLYL         + + PRGNR  LQTGELDK              PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTWLELY 
Subjt:  TISGVYKLNQKLYLVSCRVFENEEFDGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI

Query:  ESVHI
        ESVH+
Subjt:  ESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.7e-2262.86Show/hide
Query:  TISGVYKLNQKLYLVSCRVFENEEFDGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI
        +I  V+K NQKLYL         + + PRGNR  LQTGELDK              PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTWLELY 
Subjt:  TISGVYKLNQKLYLVSCRVFENEEFDGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI

Query:  ESVHI
        ESVH+
Subjt:  ESVHI

A0A5A7UFD2 Uncharacterized protein3.9e-2758.33Show/hide
Query:  TISGVYKLNQKLYLVSCRVFENEEF---------------------------DGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEI
        +I  +YKLNQKLYLVSC VFENEEF                           + PRGNR SLQTGELDKT             PLSTLSVLRDNDAVVEI
Subjt:  TISGVYKLNQKLYLVSCRVFENEEF---------------------------DGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEI

Query:  ELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        ELP P+ LPTSAESSRS+SSTWLELY E VH+
Subjt:  ELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5A7V5Z6 Uncharacterized protein2.0e-2353.79Show/hide
Query:  TISGVYKLNQKLYLVSCRVFENEEF---------------------------DGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEI
        +I  V++ NQ LYLVSCRVF +E+F                           + PRGNR SLQTG+LDKT             PLS LSVLRDND VVEI
Subjt:  TISGVYKLNQKLYLVSCRVFENEEF---------------------------DGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEI

Query:  ELPVPDTLPTSAESSRSSSSTWLELYIESVHI
        ELPVPDT PTS ESS S+SSTWLELYIESVH+
Subjt:  ELPVPDTLPTSAESSRSSSSTWLELYIESVHI

A0A5A7V9N3 Reverse transcriptase3.8e-2264.15Show/hide
Query:  TISGVYKLNQKLYLVSCRVFENEEFDGP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELY
        +I  V+K NQKLYL      ++ ++D   RGNRSSLQ+GELD T             PLSTLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTWLELY
Subjt:  TISGVYKLNQKLYLVSCRVFENEEFDGP-RGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELY

Query:  IESVHI
         ESVH+
Subjt:  IESVHI

A0A5D3DR18 Gag/pol protein1.7e-2262.86Show/hide
Query:  TISGVYKLNQKLYLVSCRVFENEEFDGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI
        +I  V+K NQKLYL         + + PRGNR  LQTGELDK              PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SSTWLELY 
Subjt:  TISGVYKLNQKLYLVSCRVFENEEFDGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWLELYI

Query:  ESVHI
        ESVH+
Subjt:  ESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCGTCCAAACCACCTGAAAGCCTCTCATTGGGACGAACTTTGTGTTCCAAACACTTCAAAACGCAAATGGAGAAAATTTTGGACCATCTCTGGGGTGTACAAGTT
GAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCG
AGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTG
CCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTCGTCCAAACCACCTGAAAGCCTCTCATTGGGACGAACTTTGTGTTCCAAACACTTCAAAACGCAAATGGAGAAAATTTTGGACCATCTCTGGGGTGTACAAGTT
GAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACACCCG
AGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTG
CCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MCRPNHLKASHWDELCVPNTSKRKWRKFWTISGVYKLNQKLYLVSCRVFENEEFDGPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPVPDTL
PTSAESSRSSSSTWLELYIESVHIVNVL