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Spg007934 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007934
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold7:28873513..28877090
RNA-Seq ExpressionSpg007934
SyntenySpg007934
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051940.1 hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa]9.1e-0789.47Show/hide
Query:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKY
        PL TLSVLRDNDAVVEIELLVPDTLPTSAESS S+S Y
Subjt:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKY
KAA0057197.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-0680.49Show/hide
Query:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
        PL TLSVLRDNDA+VEIELLVPDTLPTSAESS S+S   +E
Subjt:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
TYK01618.1 uncharacterized protein E5676_scaffold451G002250 [Cucumis melo var. makuwa]1.5e-0682.93Show/hide
Query:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
        PL TLSVLRDNDAVVEIELLVP+TLPTSAESSIS+S   +E
Subjt:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
TYK12219.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.1e-0789.47Show/hide
Query:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKY
        PL TLSVLRDNDAVVEIELLVPDTLPTSAESS S+S Y
Subjt:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKY
TYK18765.1 gag/pol protein [Cucumis melo var. makuwa]3.5e-0680.49Show/hide
Query:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
        PL TLSVLRDNDA+VEIELLVPDTLPTSAESS S+S   +E
Subjt:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
TrEMBL top hitse value%identityAlignment
A0A5A7U9T8 Uncharacterized protein4.4e-0789.47Show/hide
Query:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKY
        PL TLSVLRDNDAVVEIELLVPDTLPTSAESS S+S Y
Subjt:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKY
A0A5A7URC7 Gag/pol protein1.7e-0680.49Show/hide
Query:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
        PL TLSVLRDNDA+VEIELLVPDTLPTSAESS S+S   +E
Subjt:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
A0A5D3BRI2 Uncharacterized protein7.5e-0782.93Show/hide
Query:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
        PL TLSVLRDNDAVVEIELLVP+TLPTSAESSIS+S   +E
Subjt:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
A0A5D3CPH9 Ty3-gypsy retrotransposon protein4.4e-0789.47Show/hide
Query:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKY
        PL TLSVLRDNDAVVEIELLVPDTLPTSAESS S+S Y
Subjt:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKY
A0A5D3D5E2 Gag/pol protein1.7e-0680.49Show/hide
Query:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
        PL TLSVLRDNDA+VEIELLVPDTLPTSAESS S+S   +E
Subjt:  PLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCTGAAGC
TCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTT
CCATATCAAGCTCCAAATATAGAGTTGAGAGAACACCAACCTTTGTAGCTCACTTATGTGGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTGGATAACCTCTAGA
GTCTTCCCTACTATTCTCTTGGGCCTAGAAAGACTTGTGGGAGTCTATAGAAGAAAGATAGAAGGGAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCTGAAGC
TCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTT
CCATATCAAGCTCCAAATATAGAGTTGAGAGAACACCAACCTTTGTAGCTCACTTATGTGGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTGGATAACCTCTAGA
GTCTTCCCTACTATTCTCTTGGGCCTAGAAAGACTTGTGGGAGTCTATAGAAGAAAGATAGAAGGGAATGCTTGA
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFSLVFRAFWGVQVESEALFGYIPLLTLSVLRDNDAVVEIELLVPDTLPTSAESSISSSKYRVERTPTFVAHLCGTPCGVCLSYAPWITSR
VFPTILLGLERLVGVYRRKIEGNA