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Spg007935 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007935
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold7:28784080..28790840
RNA-Seq ExpressionSpg007935
SyntenySpg007935
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-1745.32Show/hide
Query:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSADSSRSSSNTWVELY
        STGFSSKPGG LVFS  LSI+       ++   I   WPRGNR  LQTGELDK                  VEIELP+PDTLPTSA+SS S+S+TW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSADSSRSSSNTWVELY

Query:  IESVYYVNVLFNVQEGQRVS----------LEEDDVSWV
         ESV+   + +   + +  S          +  DDV W+
Subjt:  IESVYYVNVLFNVQEGQRVS----------LEEDDVSWV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]8.0e-1851.69Show/hide
Query:  QSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSADSSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS--
        +ST F SK GG LVFS  L           SI PRGNR +L TG+LDKTVEIELPVPDTLPTSA+SS+S+S+TW+ELY ESV +V +LF      RV+  
Subjt:  QSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSADSSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS--

Query:  ---------LEEDDVSWV
                 +  DD+ W+
Subjt:  ---------LEEDDVSWV

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]6.1e-1857.94Show/hide
Query:  QSTGFSSKPGGSLVFSGVLSIRGC--TSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSADSSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS
        +STG SSKP G LVFS  LS+     + +    +WPRGNR SLQT ELDKT  IELPVPDTLPTSA+SS S+S+TW+ELY ESV +V + +   +GQ+ S
Subjt:  QSTGFSSKPGGSLVFSGVLSIRGC--TSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSADSSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS

Query:  LEEDDVS
        LEE  +S
Subjt:  LEEDDVS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.1e-1943.45Show/hide
Query:  GKQSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSADSSRSSSNTWVELYIES
        G +STGFSSKPGG LV S  LSI     ++   ++  PRGNR SLQTGELDKTV                IELPVPDTLPTSA+SS S+S+TW+ELY ES
Subjt:  GKQSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSADSSRSSSNTWVELYIES

Query:  VYY-------------VNVLFNVQEGQRVSLEEDDVSWVRVANTPTQYAFLFGDKTEWEDGDITTQEG
        V+              ++++FNV  G    +  DDV W+             G  T WE    +TQ G
Subjt:  VYY-------------VNVLFNVQEGQRVSLEEDDVSWVRVANTPTQYAFLFGDKTEWEDGDITTQEG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-1745.32Show/hide
Query:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSADSSRSSSNTWVELY
        STGFSSKPGG LVFS  LSI+       ++   I   WPRGNR  LQTGELDK                  VEIELP+PDTLPTSA+SS S+S+TW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSADSSRSSSNTWVELY

Query:  IESVYYVNVLFNVQEGQRVS----------LEEDDVSWV
         ESV+   + +   + +  S          +  DDV W+
Subjt:  IESVYYVNVLFNVQEGQRVS----------LEEDDVSWV

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein8.6e-1845.32Show/hide
Query:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSADSSRSSSNTWVELY
        STGFSSKPGG LVFS  LSI+       ++   I   WPRGNR  LQTGELDK                  VEIELP+PDTLPTSA+SS S+S+TW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSADSSRSSSNTWVELY

Query:  IESVYYVNVLFNVQEGQRVS----------LEEDDVSWV
         ESV+   + +   + +  S          +  DDV W+
Subjt:  IESVYYVNVLFNVQEGQRVS----------LEEDDVSWV

A0A5A7UAH6 CCHC-type domain-containing protein3.9e-1851.69Show/hide
Query:  QSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSADSSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS--
        +ST F SK GG LVFS  L           SI PRGNR +L TG+LDKTVEIELPVPDTLPTSA+SS+S+S+TW+ELY ESV +V +LF      RV+  
Subjt:  QSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSADSSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS--

Query:  ---------LEEDDVSWV
                 +  DD+ W+
Subjt:  ---------LEEDDVSWV

A0A5D3CJX3 CCHC-type domain-containing protein5.4e-2043.45Show/hide
Query:  GKQSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSADSSRSSSNTWVELYIES
        G +STGFSSKPGG LV S  LSI     ++   ++  PRGNR SLQTGELDKTV                IELPVPDTLPTSA+SS S+S+TW+ELY ES
Subjt:  GKQSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIW--PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSADSSRSSSNTWVELYIES

Query:  VYY-------------VNVLFNVQEGQRVSLEEDDVSWVRVANTPTQYAFLFGDKTEWEDGDITTQEG
        V+              ++++FNV  G    +  DDV W+             G  T WE    +TQ G
Subjt:  VYY-------------VNVLFNVQEGQRVSLEEDDVSWVRVANTPTQYAFLFGDKTEWEDGDITTQEG

A0A5D3DR18 Gag/pol protein8.6e-1845.32Show/hide
Query:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSADSSRSSSNTWVELY
        STGFSSKPGG LVFS  LSI+       ++   I   WPRGNR  LQTGELDK                  VEIELP+PDTLPTSA+SS S+S+TW+ELY
Subjt:  STGFSSKPGGSLVFSGVLSIR---GCTSRIRSSI---WPRGNRSSLQTGELDK-----------------TVEIELPVPDTLPTSADSSRSSSNTWVELY

Query:  IESVYYVNVLFNVQEGQRVS----------LEEDDVSWV
         ESV+   + +   + +  S          +  DDV W+
Subjt:  IESVYYVNVLFNVQEGQRVS----------LEEDDVSWV

A0A5D3DWP3 Uncharacterized protein3.0e-1857.94Show/hide
Query:  QSTGFSSKPGGSLVFSGVLSIRGC--TSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSADSSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS
        +STG SSKP G LVFS  LS+     + +    +WPRGNR SLQT ELDKT  IELPVPDTLPTSA+SS S+S+TW+ELY ESV +V + +   +GQ+ S
Subjt:  QSTGFSSKPGGSLVFSGVLSIRGC--TSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSADSSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS

Query:  LEEDDVS
        LEE  +S
Subjt:  LEEDDVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGGAGAAGTTAATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCGGGGGTGTAC
AAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAA
CGTCTGCTGATAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCG
TTAGAGGAGGACGATGTCTCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACAGAGTGGGAGGATGGGGACATCACAACACAAGA
AGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAGGAGAAGTTAATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCGGGGGTGTAC
AAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAA
CGTCTGCTGATAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCG
TTAGAGGAGGACGATGTCTCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACAGAGTGGGAGGATGGGGACATCACAACACAAGA
AGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTAG
Protein sequenceShow/hide protein sequence
MVGEVNGFWNGKQSTGFSSKPGGSLVFSGVLSIRGCTSRIRSSIWPRGNRSSLQTGELDKTVEIELPVPDTLPTSADSSRSSSNTWVELYIESVYYVNVLFNVQEGQRVS
LEEDDVSWVRVANTPTQYAFLFGDKTEWEDGDITTQEGIHSFPLLGEVDE