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Spg007947 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg007947
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description50S ribosomal protein L6
Genome locationscaffold4:6875922..6878113
RNA-Seq ExpressionSpg007947
SyntenySpg007947
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000702 - Ribosomal protein L6
IPR020040 - Ribosomal protein L6, alpha-beta domain
IPR036789 - Ribosomal protein L6, alpha-beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008455431.1 PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo]1.6e-4790Show/hide
Query:  SIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETR
        S+    +NFRSTFLGEKNGF VSAMPVC IGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREV +EREDSGI+RVKKALETR
Subjt:  SIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETR

Query:  RANQMHGLFR
        RANQMHGLFR
Subjt:  RANQMHGLFR

XP_022136314.1 50S ribosomal protein L6, chloroplastic [Momordica charantia]1.8e-5192.17Show/hide
Query:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK
        MASTL+IPFQTSNFRSTFLGEKNGFSVS MPVC IGLLRKTIECKESRIGKQPIQVPSNV I LQGQDLKVKGPLGELSILYPREV +EREDSGILRVKK
Subjt:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK

Query:  ALETRRANQMHGLFR
        A+ETRRA QMHGLFR
Subjt:  ALETRRANQMHGLFR

XP_022930652.1 50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata]3.3e-5091.3Show/hide
Query:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK
        MASTLSIPFQTSNFRSTFLGEKNGFS S MPV  I  LRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELS+LYPREV +ER+DSGILRVKK
Subjt:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK

Query:  ALETRRANQMHGLFR
        ALETRRANQMHGLFR
Subjt:  ALETRRANQMHGLFR

XP_022988916.1 50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita maxima]3.3e-5091.3Show/hide
Query:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK
        MASTLSIPFQTSNFRSTFLGEKNGFS S MPV  I  LRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELS+LYPREV +ER+DSGILRVKK
Subjt:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK

Query:  ALETRRANQMHGLFR
        ALETRRANQMHGLFR
Subjt:  ALETRRANQMHGLFR

XP_023530191.1 50S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo]4.8e-4988.7Show/hide
Query:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK
        MASTLSIPFQTSNFRSTFLGEKNGFS S +PV  I  LR+TIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELS+LYPREV +ER+D+GILRVKK
Subjt:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK

Query:  ALETRRANQMHGLFR
        ALETRRANQMHGLFR
Subjt:  ALETRRANQMHGLFR

TrEMBL top hitse value%identityAlignment
A0A0A0K3K9 Uncharacterized protein1.1e-4692.31Show/hide
Query:  SNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETRRANQMH
        +NFRSTFLGEKNGF VSAMP C IGLLRKTIECKESRIGKQPIQVPS+VTITLQGQDLKVKGPLGELSILYPREV +EREDSGI+RVKKALETRRANQMH
Subjt:  SNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETRRANQMH

Query:  GLFR
        GLFR
Subjt:  GLFR

A0A1S3C0W5 50S ribosomal protein L6, chloroplastic7.5e-4890Show/hide
Query:  SIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETR
        S+    +NFRSTFLGEKNGF VSAMPVC IGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREV +EREDSGI+RVKKALETR
Subjt:  SIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETR

Query:  RANQMHGLFR
        RANQMHGLFR
Subjt:  RANQMHGLFR

A0A6J1C3Z5 50S ribosomal protein L6, chloroplastic8.6e-5292.17Show/hide
Query:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK
        MASTL+IPFQTSNFRSTFLGEKNGFSVS MPVC IGLLRKTIECKESRIGKQPIQVPSNV I LQGQDLKVKGPLGELSILYPREV +EREDSGILRVKK
Subjt:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK

Query:  ALETRRANQMHGLFR
        A+ETRRA QMHGLFR
Subjt:  ALETRRANQMHGLFR

A0A6J1ER61 50S ribosomal protein L6, chloroplastic isoform X21.6e-5091.3Show/hide
Query:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK
        MASTLSIPFQTSNFRSTFLGEKNGFS S MPV  I  LRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELS+LYPREV +ER+DSGILRVKK
Subjt:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK

Query:  ALETRRANQMHGLFR
        ALETRRANQMHGLFR
Subjt:  ALETRRANQMHGLFR

A0A6J1JIK5 50S ribosomal protein L6, chloroplastic isoform X21.6e-5091.3Show/hide
Query:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK
        MASTLSIPFQTSNFRSTFLGEKNGFS S MPV  I  LRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELS+LYPREV +ER+DSGILRVKK
Subjt:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK

Query:  ALETRRANQMHGLFR
        ALETRRANQMHGLFR
Subjt:  ALETRRANQMHGLFR

SwissProt top hitse value%identityAlignment
A7HWS6 50S ribosomal protein L64.1e-1153.62Show/hide
Query:  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETRRANQMHGLFR
        SRIGK P++VP  VT+TL GQDL VKGP GEL +    +V VE+ +SG L+V    +T+RA  M GL R
Subjt:  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETRRANQMHGLFR

O23049 50S ribosomal protein L6, chloroplastic2.6e-3768.7Show/hide
Query:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK
        MAS+L   FQ    RS FLG++N F VS+ P  ++G   KTIECKESRIGKQPI VPSNVTI L+GQDLKVKGPLGEL++ YPREV + +E+SG LRVKK
Subjt:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK

Query:  ALETRRANQMHGLFR
         +ETRRANQMHGLFR
Subjt:  ALETRRANQMHGLFR

P82193 50S ribosomal protein L6, chloroplastic3.2e-3567.57Show/hide
Query:  LSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALET
        +S+P   S+ +S FLG K   S S +PV RIG  RK+++CKESRIGKQPI VP+NV I ++GQDLKVKGPLGELSI YPREV+VE+++SG LRV+KA+ET
Subjt:  LSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALET

Query:  RRANQMHGLFR
        RRANQMHGLFR
Subjt:  RRANQMHGLFR

Q110C1 50S ribosomal protein L61.9e-1152.17Show/hide
Query:  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETRRANQMHGLFR
        SRIGK PI +P  VTIT++GQ + VKGPLGELS + P E+ V+ +++ I+ VK   ++RRA Q +GL R
Subjt:  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETRRANQMHGLFR

Q8DML8 50S ribosomal protein L64.1e-1152.17Show/hide
Query:  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETRRANQMHGLFR
        SRIGK+PI +P NVT+TL GQ + VKGP G+LS ++P EV V +E   I+ VK+  ++R A + HGL R
Subjt:  SRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETRRANQMHGLFR

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family1.8e-3868.7Show/hide
Query:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK
        MAS+L   FQ    RS FLG++N F VS+ P  ++G   KTIECKESRIGKQPI VPSNVTI L+GQDLKVKGPLGEL++ YPREV + +E+SG LRVKK
Subjt:  MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKK

Query:  ALETRRANQMHGLFR
         +ETRRANQMHGLFR
Subjt:  ALETRRANQMHGLFR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGCAATTTTCGGTCTACATTTTTGGGAGAGAAGAATGGATTCTCTGTTTCTGCAATGCCTGTATGCCGTATTGGTCT
CTTGAGGAAGACTATAGAATGTAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTC
CTTTGGGAGAACTTTCAATTCTTTATCCACGAGAAGTGATGGTTGAGAGGGAAGATTCTGGGATCTTAAGGGTCAAGAAGGCACTGGAGACAAGAAGAGCCAATCAGATG
CATGGGCTTTTCAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGCAATTTTCGGTCTACATTTTTGGGAGAGAAGAATGGATTCTCTGTTTCTGCAATGCCTGTATGCCGTATTGGTCT
CTTGAGGAAGACTATAGAATGTAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTC
CTTTGGGAGAACTTTCAATTCTTTATCCACGAGAAGTGATGGTTGAGAGGGAAGATTCTGGGATCTTAAGGGTCAAGAAGGCACTGGAGACAAGAAGAGCCAATCAGATG
CATGGGCTTTTCAGGTAA
Protein sequenceShow/hide protein sequence
MASTLSIPFQTSNFRSTFLGEKNGFSVSAMPVCRIGLLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVKGPLGELSILYPREVMVEREDSGILRVKKALETRRANQM
HGLFR