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Spg008051 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008051
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold4:6466043..6467967
RNA-Seq ExpressionSpg008051
SyntenySpg008051
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]2.9e-1137.82Show/hide
Query:  KLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRS---APLIVEADALDVIRAMNYEIVDIFETKIVLNE
        KLNS ASW+E+   GGV W+I DS GS +   CK+++RKW +K ++  A+ EGLK YL      S    P+I     L++ R +N   +D+ E   V++E
Subjt:  KLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRS---APLIVEADALDVIRAMNYEIVDIFETKIVLNE

Query:  VEEMAAEANAISFIKCPRV
        + ++   A  ISF + P +
Subjt:  VEEMAAEANAISFIKCPRV

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.3e-0837.76Show/hide
Query:  KWT-PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDI
        +W+ P  NC KLN++ASW+E+   GG+GWI+ D  G +V A   +I+ K  I +++ + I  GL+     N    +P+ +E+D+++VIR M  E VD+
Subjt:  KWT-PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDI

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.3e-1435.07Show/hide
Query:  PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFETKIV
        P+ N  KLN+NA+W  D +TGG+GWI+RD  G +++A C+ I+ + +I  ++ +AI EGL+A     ++   P+ +E+D+L+ I  ++ +  D  E   +
Subjt:  PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFETKIV

Query:  LNEVEEMAAEANAISFIKCPRVGNRIAHFLARAA
        L E+ +M  +   +S     R  N++AH LAR A
Subjt:  LNEVEEMAAEANAISFIKCPRVGNRIAHFLARAA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.1e-0933.1Show/hide
Query:  NHEKWTPSP-NCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVD
        N  KW P P +   LN++ASW++  H GG+GWIIR   G +V A  + ++   ++K +++ AI EGL+     N     PL +E D+ +V   +N +  D
Subjt:  NHEKWTPSP-NCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVD

Query:  IFETKIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAAA
        + +T  V+ E+  +      ++F K  R  N  AH LA+ A+
Subjt:  IFETKIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAAA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.8e-1333.09Show/hide
Query:  PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARN-----RDRSAPLIVEADALDVIRAMNYEIVDIF
        P+ N  KLN++A+W  D +TGG+GWI+RD  G +++A C+ I+ + +I  ++ +AI EGL+A    +     ++   P+ +E+D+L+ I  ++ +  D  
Subjt:  PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARN-----RDRSAPLIVEADALDVIRAMNYEIVDIF

Query:  ETKIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAA
        E   +L E+ +M  +   +S     R  N++AH LAR A
Subjt:  ETKIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134126.1e-1535.07Show/hide
Query:  PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFETKIV
        P+ N  KLN+NA+W  D +TGG+GWI+RD  G +++A C+ I+ + +I  ++ +AI EGL+A     ++   P+ +E+D+L+ I  ++ +  D  E   +
Subjt:  PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFETKIV

Query:  LNEVEEMAAEANAISFIKCPRVGNRIAHFLARAA
        L E+ +M  +   +S     R  N++AH LAR A
Subjt:  LNEVEEMAAEANAISFIKCPRVGNRIAHFLARAA

A0A6J1CQG0 uncharacterized protein LOC1110132161.1e-0837.76Show/hide
Query:  KWT-PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDI
        +W+ P  NC KLN++ASW+E+   GG+GWI+ D  G +V A   +I+ K  I +++ + I  GL+     N    +P+ +E+D+++VIR M  E VD+
Subjt:  KWT-PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDI

A0A6J1DNV9 uncharacterized protein LOC1110224031.0e-0933.1Show/hide
Query:  NHEKWTPSP-NCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVD
        N  KW P P +   LN++ASW++  H GG+GWIIR   G +V A  + ++   ++K +++ AI EGL+     N     PL +E D+ +V   +N +  D
Subjt:  NHEKWTPSP-NCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVD

Query:  IFETKIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAAA
        + +T  V+ E+  +      ++F K  R  N  AH LA+ A+
Subjt:  IFETKIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAAA

A0A6J1DSV1 uncharacterized protein LOC1110236088.7e-1433.09Show/hide
Query:  PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARN-----RDRSAPLIVEADALDVIRAMNYEIVDIF
        P+ N  KLN++A+W  D +TGG+GWI+RD  G +++A C+ I+ + +I  ++ +AI EGL+A    +     ++   P+ +E+D+L+ I  ++ +  D  
Subjt:  PSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARN-----RDRSAPLIVEADALDVIRAMNYEIVDIF

Query:  ETKIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAA
        E   +L E+ +M  +   +S     R  N++AH LAR A
Subjt:  ETKIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAA

A0A6J5UV01 Reverse transcriptase domain-containing protein5.5e-0832.82Show/hide
Query:  WTPSP-NCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFET
        W   P   LK+N +A+W      GGVGW++RDS G +V+A CK   R  S  +M++ AI+E L   LA  +   + L VE+D+L +IR +  E       
Subjt:  WTPSP-NCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFET

Query:  KIVLNEVEEMAAEANAISFIKCPRVGNRIAH
        + ++ +++++  +     F+  PR  N+ AH
Subjt:  KIVLNEVEEMAAEANAISFIKCPRVGNRIAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.0e-0725.17Show/hide
Query:  KWTPSP-NCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFE
        +W   P   +K N++A+W  +    G+GWI+R+ SG ++    + + R  ++   +  A++    A L  +R     +I E+DA  ++  +N +  D + 
Subjt:  KWTPSP-NCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFE

Query:  T-KIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAAAGFSPLIP
        T +  L +++++      + F   PR GN++A  +AR +  FS   P
Subjt:  T-KIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAAAGFSPLIP

AT4G29090.1 Ribonuclease H-like superfamily protein3.2e-0824.65Show/hide
Query:  KWTPSPN-CLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFE
        +W P P+  +K N++A+WN D    G+GW++R+  G +     + + +   +KS+    ++    A L+ +R +   +I E+D+  +I  +N +  +I+ 
Subjt:  KWTPSPN-CLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFE

Query:  T-KIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAAAGF
        + K  + +++ + ++   + F+  PR GN +A  +AR +  F
Subjt:  T-KIVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAAAGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGAGAGCCATAGGAATCATGAGAAATGGACCCCCTCTCCGAATTGCCTGAAATTAAATTCGAACGCCTCCTGGAATGAAGATCTTCATACCGGAGGTGTGGGCTG
GATTATCCGTGATTCCTCAGGATCTCTTGTTGAAGCTGTTTGCAAACAAATTAAAAGGAAGTGGTCAATCAAATCTATGAAATCTCTTGCGATTAAGGAAGGTCTGAAAG
CATACCTTGCCAGAAATAGAGATCGGAGCGCTCCTTTGATTGTAGAAGCTGACGCCTTAGACGTAATTCGGGCGATGAACTACGAAATTGTTGACATTTTCGAAACAAAA
ATCGTGCTAAACGAGGTGGAGGAAATGGCGGCTGAAGCGAATGCAATCTCTTTTATCAAATGCCCTAGAGTAGGGAATCGGATCGCGCACTTCCTTGCGCGAGCAGCGGC
TGGGTTTTCTCCGCTAATACCTGCAAGTAGGAGGGACATTTCCATAGAAGTCGAATCGGACGCTCTGGTTGTCATCAACGCGTTGAACGACATCACGAAAGACTCCTCTC
GGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCGAGAGCCATAGGAATCATGAGAAATGGACCCCCTCTCCGAATTGCCTGAAATTAAATTCGAACGCCTCCTGGAATGAAGATCTTCATACCGGAGGTGTGGGCTG
GATTATCCGTGATTCCTCAGGATCTCTTGTTGAAGCTGTTTGCAAACAAATTAAAAGGAAGTGGTCAATCAAATCTATGAAATCTCTTGCGATTAAGGAAGGTCTGAAAG
CATACCTTGCCAGAAATAGAGATCGGAGCGCTCCTTTGATTGTAGAAGCTGACGCCTTAGACGTAATTCGGGCGATGAACTACGAAATTGTTGACATTTTCGAAACAAAA
ATCGTGCTAAACGAGGTGGAGGAAATGGCGGCTGAAGCGAATGCAATCTCTTTTATCAAATGCCCTAGAGTAGGGAATCGGATCGCGCACTTCCTTGCGCGAGCAGCGGC
TGGGTTTTCTCCGCTAATACCTGCAAGTAGGAGGGACATTTCCATAGAAGTCGAATCGGACGCTCTGGTTGTCATCAACGCGTTGAACGACATCACGAAAGACTCCTCTC
GGACATGA
Protein sequenceShow/hide protein sequence
MLESHRNHEKWTPSPNCLKLNSNASWNEDLHTGGVGWIIRDSSGSLVEAVCKQIKRKWSIKSMKSLAIKEGLKAYLARNRDRSAPLIVEADALDVIRAMNYEIVDIFETK
IVLNEVEEMAAEANAISFIKCPRVGNRIAHFLARAAAGFSPLIPASRRDISIEVESDALVVINALNDITKDSSRT