CuGenDBv2

Gene ID	Spg008060
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic-like
Genome location	scaffold4:7504647..7505171
RNA-Seq Expression	Spg008060
Synteny	Spg008060
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6572353.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

7.5e-70

85.63

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA
        MASPTL+TP TSKSQPL++PLKPKS+ +AAA+T    H  RRREFLSLTASVLA  WVLF PAPA AS  DEEYVKDT EVI KVRTTI MDKNDPNVAA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022930794.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

8.9e-71

86.21

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA
        MAS TL+TPCTSKSQPL++P KPKST SAAA      H+PRRRE LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA 
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022988975.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]

8.9e-71

86.21

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA
        MAS  L+TPCTSKSQPL++P KPKST SAAA      H+PRRRE LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA 
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_023529218.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.2e-71

86.21

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA
        MAS TL+TPCTSKSQPL++P KPKST SAAA      H+PRRRE LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVI+KVRTTI MDKNDPNVA 
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_023554625.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]

5.7e-70

86.21

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA
        MASPTL+TP TSKSQPL+VPLKPKS+ +AAA+T    H  RRREFLSLTASVLA  WVLF PAPA AS  DEEYVKDT EVI KVRTTI MDKNDPNVAA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1S2 Uncharacterized protein

3.5e-65

82.76

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA
        MASPTL+TPCTSKSQ   +PLKPKST SAA +T       RRREFLSLTASVLA  +VLF  +PA A+ DD EYVKDTNEVI KVRTTI MD+NDPNVAA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVA+LRESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1ESI1 photosystem II repair protein PSB27-H1, chloroplastic-like

4.3e-71

86.21

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA
        MAS TL+TPCTSKSQPL++P KPKST SAAA      H+PRRRE LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA 
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

2.4e-69

86.21

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA
        MASPTL+TP TSKSQPL++PLKPKS+ SAAA+T    H  RRREFLSLTASVLA  WVLF PAPA AS  DEEYVKDT EVI KVRTTI MDKNDPNVAA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

2.4e-69

86.21

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA
        MASPTL+TP TSKSQPL++PLKPKS+ SAAA+T    H  RRREFLSLTASVLA  WVLF PAPA AS  DEEYVKDT EVI KVRTTI MDKNDPNVAA
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1JL33 photosystem II repair protein PSB27-H1, chloroplastic-like

4.3e-71

86.21

Show/hide

Query:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA
        MAS  L+TPCTSKSQPL++P KPKST SAAA      H+PRRRE LSLTASVLAAPWVL  PAPAQAS +DEEYVKDTNEVISKVRTTI MDKNDPNVA 
Subjt:  MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAA

Query:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AVAELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  AVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

9.9e-49

67.7

Show/hide

Query:  LKPKSTTSAAASTAAPAHNPR-----RREFLSL--TASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWV
        L P   T  A+S + P   PR     RR+FLSL  T+++L        PAP  A+ +DEEY+KDT+ VISKVR+T++M K DPNVA AVAELRE+SNSWV
Subjt:  LKPKSTTSAAASTAAPAHNPR-----RREFLSL--TASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWV

Query:  AKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

3.0e-05

25.41

Show/hide

Query:  VLAAPWVLFRPAPAQASPDD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT
        V+ A   LF P     S  +  + Y+K   EV+  +R ++  + K++     +    +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+
Subjt:  VLAAPWVLFRPAPAQASPDD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT

Query:  APIPAKRKARILEEMDTAEKAL
        AP+P + K  IL++++ AE+ L
Subjt:  APIPAKRKARILEEMDTAEKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

7.0e-50

67.7

Show/hide

Query:  LKPKSTTSAAASTAAPAHNPR-----RREFLSL--TASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWV
        L P   T  A+S + P   PR     RR+FLSL  T+++L        PAP  A+ +DEEY+KDT+ VISKVR+T++M K DPNVA AVAELRE+SNSWV
Subjt:  LKPKSTTSAAASTAAPAHNPR-----RREFLSL--TASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSNSWV

Query:  AKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  AKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

2.1e-06

25.41

Show/hide

Query:  VLAAPWVLFRPAPAQASPDD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT
        V+ A   LF P     S  +  + Y+K   EV+  +R ++  + K++     +    +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+
Subjt:  VLAAPWVLFRPAPAQASPDD--EEYVKDTNEVISKVRTTINMD-KNDPNVAAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT

Query:  APIPAKRKARILEEMDTAEKAL
        AP+P + K  IL++++ AE+ L
Subjt:  APIPAKRKARILEEMDTAEKAL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCTCCCCAACGCTCATGACTCCCTGTACTTCCAAATCTCAGCCTCTCGTCGTCCCCCTCAAGCCCAAATCCACCACCTCCGCCGCCGCATCCACCGCCGCCCCCGC
CCACAATCCCCGCCGCCGCGAGTTCCTGTCCTTGACGGCCTCTGTTCTGGCGGCGCCGTGGGTTCTGTTTCGCCCGGCGCCGGCGCAGGCCTCGCCGGACGACGAGGAGT
ACGTGAAGGACACGAACGAGGTGATAAGCAAGGTGAGGACGACGATCAACATGGACAAGAACGACCCGAACGTGGCGGCGGCGGTGGCGGAGCTTCGAGAAAGTTCGAAT
TCGTGGGTGGCGAAGTACAGGAAGGAGAAGGCTCTGTTGGGAAGAGCTTCGTTTAGGGATATGTATTCGGCTCTGAATGCGGTGTCGGGGCATTACATTAGCTTTGGGCC
GACGGCGCCGATTCCGGCGAAGAGGAAGGCCAGGATTTTGGAAGAGATGGACACTGCCGAGAAGGCTCTGTTAAGAGGGAGATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MASPTLMTPCTSKSQPLVVPLKPKSTTSAAASTAAPAHNPRRREFLSLTASVLAAPWVLFRPAPAQASPDDEEYVKDTNEVISKVRTTINMDKNDPNVAAAVAELRESSN
SWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Spg008060 (gene) of Sponge gourd (cylindrica) v1 genome