CuGenDBv2

Gene ID	Spg008125
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Endoribonuclease E-like protein
Genome location	scaffold1:53228671..53231969
RNA-Seq Expression	Spg008125
Synteny	Spg008125
Gene Ontology terms	NA
InterPro domains	IPR040320 - Uncharacterized protein At4g37920-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6603165.1 hypothetical protein SDJN03_03774, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-78

89.08

Show/hide

Query:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW
        FK SPKNSKS+NR T T+ TPMQFNASARA DV TTEM EQAEMEVAEGYTISQFCDKIIDIF+NEKPKTKEWRK LVFREEWKKYRESFYSH QRRADW
Subjt:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW

Query:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        ESDP MKEKLLSL R+VKRIDDEMEIHSELLKELQDSPTDINAIVAKRR+EFTE+FFKFLTL+SETHDSLED D
Subjt:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

XP_022933100.1 uncharacterized protein At4g37920 [Cucurbita moschata]

1.0e-78

89.08

Show/hide

Query:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW
        FK SPKNSKS+NR T T+ TPMQFNASAR  DV TTEM EQAEMEVAEGYTISQFCDKIIDIF+NEKPKTKEWRK LVFREEWKKYRESFYSH QRRADW
Subjt:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW

Query:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        ESDP MKEKLLSL R+VKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTE+FFKFLTL+SETHDSLED D
Subjt:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

XP_022967802.1 uncharacterized protein At4g37920 [Cucurbita maxima]

2.6e-79

89.08

Show/hide

Query:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW
        FKP+PKNSKS+NR T T+ TPMQFNASARA DV TTEM EQ EMEVAEGYTISQFCDKIIDIF+NEKPKTKEWRK LVFREEWKKYRESFYSH QRRADW
Subjt:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW

Query:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        ESDP MKEKLLSL R+VKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTE+FFKFLTL+SETHDSLED D
Subjt:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

XP_023544083.1 uncharacterized protein At4g37920 [Cucurbita pepo subsp. pepo]

2.0e-79

89.66

Show/hide

Query:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW
        FKPSPKNSKS+NR T T+ TPMQFNASARA DV T EM EQAEMEVAEGYTISQFCDKIIDIF+NEKPKTKEWRK LVFREEWKKYRESFYSH QRRADW
Subjt:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW

Query:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        ESDP MKEKLLSL R+VKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTE+FFKFLTL+SETHDSLED D
Subjt:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

XP_038883875.1 uncharacterized protein At4g37920 isoform X2 [Benincasa hispida]

7.2e-77

88.51

Show/hide

Query:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW
        FKPSP+  KS+N   VTITTPMQF ASA   DV TTE  E+AEMEVAEGYTISQFCDKIIDIF+NEKPKTKEWRKFLVFREEWKKYRESFYSH QRRADW
Subjt:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW

Query:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        ESDP MKEKL+SLRRKVKRIDDEMEIH ELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
Subjt:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3X1 Uncharacterized protein

8.6e-76

86.29

Show/hide

Query:  FKPSPKNSKSNNRRTVTITTPMQ-FNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRAD
        FKPSPK SKS+NR +VTIT P+Q FNASAR  DV T+E  EQ EMEVA+GY++SQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSH QRRAD
Subjt:  FKPSPKNSKSNNRRTVTITTPMQ-FNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRAD

Query:  WESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        WE DP MKEKL+SLRRKVK+IDDEMEIHSELLKELQDSPTDINAIVAKR KEFT+EFFKFLTLISETHDSLEDRD
Subjt:  WESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

A0A1S3B4W5 uncharacterized protein At4g37920, chloroplastic isoform X1

5.9e-77

87.43

Show/hide

Query:  FKPSPKNSKSNNRRTVTITTPMQ-FNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRAD
        FKPSPK SKS+NR TVTIT P+Q FNASAR  DV T+E  EQAEMEVA+GY++SQFCDKIIDIF+NEKPKTKEWRKFLVFREEWKKYRESFYSH QRRAD
Subjt:  FKPSPKNSKSNNRRTVTITTPMQ-FNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRAD

Query:  WESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        WESDP MKEKL+SLRRKVK+IDDEMEIHSELLKELQDSPTDINAIVA RRKEFT+EFFKFLTLISETHDSLEDRD
Subjt:  WESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

A0A1S4DV48 uncharacterized protein At4g37920, chloroplastic isoform X2

5.9e-77

87.43

Show/hide

Query:  FKPSPKNSKSNNRRTVTITTPMQ-FNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRAD
        FKPSPK SKS+NR TVTIT P+Q FNASAR  DV T+E  EQAEMEVA+GY++SQFCDKIIDIF+NEKPKTKEWRKFLVFREEWKKYRESFYSH QRRAD
Subjt:  FKPSPKNSKSNNRRTVTITTPMQ-FNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRAD

Query:  WESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        WESDP MKEKL+SLRRKVK+IDDEMEIHSELLKELQDSPTDINAIVA RRKEFT+EFFKFLTLISETHDSLEDRD
Subjt:  WESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

A0A6J1F3Z5 uncharacterized protein At4g37920

4.8e-79

89.08

Show/hide

Query:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW
        FK SPKNSKS+NR T T+ TPMQFNASAR  DV TTEM EQAEMEVAEGYTISQFCDKIIDIF+NEKPKTKEWRK LVFREEWKKYRESFYSH QRRADW
Subjt:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW

Query:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        ESDP MKEKLLSL R+VKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTE+FFKFLTL+SETHDSLED D
Subjt:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

A0A6J1HRT8 uncharacterized protein At4g37920

1.3e-79

89.08

Show/hide

Query:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW
        FKP+PKNSKS+NR T T+ TPMQFNASARA DV TTEM EQ EMEVAEGYTISQFCDKIIDIF+NEKPKTKEWRK LVFREEWKKYRESFYSH QRRADW
Subjt:  FKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADW

Query:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        ESDP MKEKLLSL R+VKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTE+FFKFLTL+SETHDSLED D
Subjt:  ESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

SwissProt top hits

e value

%identity

Alignment

Q84WN0 Uncharacterized protein At4g37920

2.2e-44

52.15

Show/hide

Query:  PKNSKSNN-------------RRTVTI---TTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRE
        PKNS++++             R++ TI   T  + +N +  A   V + + +  E+EVAEGYT++QFCDKIID+FLNEKPK K+W+ +LV R+EW KY  
Subjt:  PKNSKSNN-------------RRTVTI---TTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRE

Query:  SFYSHIQRRADWESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        +FY   + RAD E+DP +K+KL+SL  KVK+ID EME H++LLKE+Q++PTDINAI AKRR++FT EFF+++TL+SET D LEDRD
Subjt:  SFYSHIQRRADWESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

Arabidopsis top hits

e value

%identity

Alignment

AT1G36320.1 unknown protein

5.8e-24

35.67

Show/hide

Query:  PMQFNASARAID---VVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADWESDPNMKEKLLSLRRKV
        P +F  SA   D   V   E  + +E  V +   + + CDK+I++F+ +KP   +WR+ L F +EW   R  FY   Q RAD E +P MK K+  L RK+
Subjt:  PMQFNASARAID---VVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRESFYSHIQRRADWESDPNMKEKLLSLRRKV

Query:  KRIDDEMEIHSELLKELQDS-PTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRDGQDTCPLISTLSL
        K +D++++ H+ELL  ++ + P +I  +VA+RRK+FT EFF+ L  ++E++   ++ D Q+    +  LS+
Subjt:  KRIDDEMEIHSELLKELQDS-PTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRDGQDTCPLISTLSL

AT4G37920.1 unknown protein

1.6e-45

52.15

Show/hide

Query:  PKNSKSNN-------------RRTVTI---TTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRE
        PKNS++++             R++ TI   T  + +N +  A   V + + +  E+EVAEGYT++QFCDKIID+FLNEKPK K+W+ +LV R+EW KY  
Subjt:  PKNSKSNN-------------RRTVTI---TTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEWRKFLVFREEWKKYRE

Query:  SFYSHIQRRADWESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD
        +FY   + RAD E+DP +K+KL+SL  KVK+ID EME H++LLKE+Q++PTDINAI AKRR++FT EFF+++TL+SET D LEDRD
Subjt:  SFYSHIQRRADWESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTGTTGGTTTTTTCCGGTTCGACTGGTTACGAAAACCCCTCTCCCTCTATGAAAAACTAAATAGAAAAACCAACGAAAATGAAGAGGTCGTGGAGTCGGAGCTGCT
GGACACGCCAGAGTCGTTGGAGTCGTCGGATTCGAACGAGAGAGAAAGAACCGCCGGAGCCGTTGGAGTCGTCGGAGCTGCTGGACACGAACGAAATGACGAGGGAGGAG
AAGACGAAGTGAAGACGAAGGGGAGGAAGTGCTTCCAGTCTCCACCTCCACCTACTTGGGCGGTTGGTCCTCTCTTCTCTTCGCTTTCTTTCAAAATTTCCGGCAATGGC
CATCACAAATCACTTGGCCTTTCAGCTCTCCATTTGCTCAACCAAAACCTTCATCTTCGGCAGCTTTTCCGCCACTCAGAAAGCACTTCCACCCTTCTCCTCTGCTTCAC
CTTCAAACCATCGCCGAAGAATTCCAAATCCAACAACCGAAGAACAGTTACAATCACAACCCCAATGCAATTCAACGCAAGTGCACGAGCGATTGATGTAGTTACAACTG
AAATGGTAGAACAAGCAGAGATGGAAGTTGCTGAGGGATATACCATCTCTCAATTTTGTGATAAAATAATTGATATTTTCTTGAATGAGAAGCCCAAGACTAAAGAATGG
AGGAAGTTTTTGGTATTTAGGGAAGAGTGGAAAAAGTATAGAGAGAGCTTCTACAGTCATATCCAGAGGCGGGCAGATTGGGAGAGTGATCCAAATATGAAAGAGAAGTT
ACTTTCACTTAGGAGAAAGGTCAAAAGGATTGATGATGAAATGGAGATCCACAGTGAACTTCTCAAGGAATTACAGGACAGCCCAACTGACATCAATGCGATAGTTGCAA
AGCGGCGCAAAGAGTTCACGGAGGAATTCTTTAAGTTCCTTACTTTGATTTCGGAAACCCATGATAGCTTGGAAGATCGTGATGGGCAAGACACGTGCCCTCTAATTTCC
ACCTTGAGCTTGCACTGGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MFVGFFRFDWLRKPLSLYEKLNRKTNENEEVVESELLDTPESLESSDSNERERTAGAVGVVGAAGHERNDEGGEDEVKTKGRKCFQSPPPPTWAVGPLFSSLSFKISGNG
HHKSLGLSALHLLNQNLHLRQLFRHSESTSTLLLCFTFKPSPKNSKSNNRRTVTITTPMQFNASARAIDVVTTEMVEQAEMEVAEGYTISQFCDKIIDIFLNEKPKTKEW
RKFLVFREEWKKYRESFYSHIQRRADWESDPNMKEKLLSLRRKVKRIDDEMEIHSELLKELQDSPTDINAIVAKRRKEFTEEFFKFLTLISETHDSLEDRDGQDTCPLIS
TLSLHW

Spg008125 (gene) of Sponge gourd (cylindrica) v1 genome