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Spg008126 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008126
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold1:52687240..52694565
RNA-Seq ExpressionSpg008126
SyntenySpg008126
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.2e-0571.05Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG
        VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSF  LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG

KAA0040839.1 uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa]1.3e-0562.79Show/hide
Query:  RAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV
        R  VRVA  PTQYA+ FGDKT+W AG++ TQ+ IHSFA LG +
Subjt:  RAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV

KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]3.8e-0560.98Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSF  LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV

KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.0e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSF LLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG

TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]2.6e-0660.87Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEVDECPL
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH F  LG VD+C L
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEVDECPL

TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.1e-0571.05Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG
        VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSF  LG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG

A0A5A7THR9 Uncharacterized protein6.3e-0662.79Show/hide
Query:  RAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV
        R  VRVA  PTQYA+ FGDKT+W AG++ TQ+ IHSFA LG +
Subjt:  RAWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV

A0A5A7TKJ4 Gag/pol protein1.8e-0560.98Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSF  LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEV

A0A5A7VFG5 Ty1-copia retrotransposon protein9.7e-0773.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSF LLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLG

A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-941.3e-0660.87Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEVDECPL
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH F  LG VD+C L
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFALLGEVDECPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTCTAGTGAGATTGTGAGATCAGAGGATCGTGTGTGTTGTAAAGGAAAGTTGGGTGAATACCAGGTGCCTCGGGTAAAAATGGTCGAGGGGTGGTATGTCACCAA
TGGATTAAGAGGAGCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGTGATGAGTCTATACGTTATGAAAGTCATCGGGTGCCTTGGATAATATGGCCAAGGGGCG
ATGTACGGTTTGATTGTGAAGGCATCGGGTGCCTTGGGTGTGAGCCACTTACTCAGTACCGTGCATGGGTGAGAGTGGCCAATACACCGACTCAATATGCCTTCCTTTTT
GGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCGCACTTCTAGGAGAAGTAGATGAGTGTCCGCTGCCGCTCGTCTCCTTGCC
GCCCACAGCCAGCCGCCGCACGCTACCGCCATCTCGCCGCCGTGAATCGCTGCCATTCACCGTCTCCCGAAGTGCCGCCGCAGCCACTGCCACCCCCAGTTTCGTCTTTC
GTTTCAGATCTGTTCGACGCCTTCAGCTAGTAGCTTGCTTAAGAGCCTTGGAGTTAAGAAATTTCTTGAAGGTTAATCCAATATCTTCTTCACTAAGGGATGATGCATAT
CAGTTTAGCCTATCAGTGTTCTCCGTAAAAGAAAAGGGTTTGGTTAACTGGGTTGCAGTCAAAATTAGCAGGTACAGATCAATTGGTGGTGTTCTAATTCTTGACGCTTT
GTCCAAATCAAGAAAGACGTTCTTGATATTTCTGAGACGACAACGACTTGCGGTTCAGCTTGGTCTGGGCATTTTTGGAGTTGGTTCATGCAGTCTGAAGCTGGTTCGAG
CTAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATTCTAGTGAGATTGTGAGATCAGAGGATCGTGTGTGTTGTAAAGGAAAGTTGGGTGAATACCAGGTGCCTCGGGTAAAAATGGTCGAGGGGTGGTATGTCACCAA
TGGATTAAGAGGAGCATCGGGTGCCTTGGGTAATATGGCCAAGGGGCGATGTGATGAGTCTATACGTTATGAAAGTCATCGGGTGCCTTGGATAATATGGCCAAGGGGCG
ATGTACGGTTTGATTGTGAAGGCATCGGGTGCCTTGGGTGTGAGCCACTTACTCAGTACCGTGCATGGGTGAGAGTGGCCAATACACCGACTCAATATGCCTTCCTTTTT
GGGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTCCTTCGCACTTCTAGGAGAAGTAGATGAGTGTCCGCTGCCGCTCGTCTCCTTGCC
GCCCACAGCCAGCCGCCGCACGCTACCGCCATCTCGCCGCCGTGAATCGCTGCCATTCACCGTCTCCCGAAGTGCCGCCGCAGCCACTGCCACCCCCAGTTTCGTCTTTC
GTTTCAGATCTGTTCGACGCCTTCAGCTAGTAGCTTGCTTAAGAGCCTTGGAGTTAAGAAATTTCTTGAAGGTTAATCCAATATCTTCTTCACTAAGGGATGATGCATAT
CAGTTTAGCCTATCAGTGTTCTCCGTAAAAGAAAAGGGTTTGGTTAACTGGGTTGCAGTCAAAATTAGCAGGTACAGATCAATTGGTGGTGTTCTAATTCTTGACGCTTT
GTCCAAATCAAGAAAGACGTTCTTGATATTTCTGAGACGACAACGACTTGCGGTTCAGCTTGGTCTGGGCATTTTTGGAGTTGGTTCATGCAGTCTGAAGCTGGTTCGAG
CTAGTTGA
Protein sequenceShow/hide protein sequence
MHSSEIVRSEDRVCCKGKLGEYQVPRVKMVEGWYVTNGLRGASGALGNMAKGRCDESIRYESHRVPWIIWPRGDVRFDCEGIGCLGCEPLTQYRAWVRVANTPTQYAFLF
GDKTEWEAGDMTTQEGIHSFALLGEVDECPLPLVSLPPTASRRTLPPSRRRESLPFTVSRSAAAATATPSFVFRFRSVRRLQLVACLRALELRNFLKVNPISSSLRDDAY
QFSLSVFSVKEKGLVNWVAVKISRYRSIGGVLILDALSKSRKTFLIFLRRQRLAVQLGLGIFGVGSCSLKLVRAS