; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg008196 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg008196
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold2:18775774..18778685
RNA-Seq ExpressionSpg008196
SyntenySpg008196
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021738354.1 uncharacterized protein LOC110704848 [Chenopodium quinoa]1.9e-1732.3Show/hide
Query:  LEWDWFEEWVVLLWAIWFRRNEMRQKK----------KGDGPVGGKTKSGCLQVGAPEFD---------------GFKVNVDAAFCLESGEAGVGVVCRD
        +E DW++ +  +LW IW +RN    +K          K  G VG   K+  L+V AP  D                +K+N DAA C      G+G V RD
Subjt:  LEWDWFEEWVVLLWAIWFRRNEMRQKK----------KGDGPVGGKTKSGCLQVGAPEFD---------------GFKVNVDAAFCLESGEAGVGVVCRD

Query:  SWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGSFTIREGNRVAHRLVR
          G V            D   AE LAA  GL +++E    P +LE D +Q+ + L+    E S LG +V D +        +  S T R GN VAH+L  
Subjt:  SWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGSFTIREGNRVAHRLVR

Query:  LAMEDRCDRVWMEEGPSCVLSLLAED
        L+ E    RVW E  P C+   +A D
Subjt:  LAMEDRCDRVWMEEGPSCVLSLLAED

XP_022135942.1 uncharacterized protein LOC111007775 [Momordica charantia]3.7e-2134.47Show/hide
Query:  NELEWDWFEEWVVLLWAIWFRRNEMR----------------------QKKKGDGPV--------GGKTKSGCLQVGAPEFDGFKVNVDAAFCLESGEAG
        + ++W   EE  V LWAIW  RN+                         +   +GP         GG+  + C     P    FKVNVDAAF   +  AG
Subjt:  NELEWDWFEEWVVLLWAIWFRRNEMR----------------------QKKKGDGPV--------GGKTKSGCLQVGAPEFDGFKVNVDAAFCLESGEAG

Query:  VGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGG--SFTIREG
        + ++ RDS   V  +A  F  ++ D   AE LAA  G+ LA+E    PF +ETDS QV  LL+ D E+ SE+G+L   ++R + +   +GG  SF  REG
Subjt:  VGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGG--SFTIREG

Query:  NRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED
        N  AH L R+ M      VW+EE  S +  ++A D
Subjt:  NRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED

XP_022139684.1 uncharacterized protein LOC111010533 [Momordica charantia]5.0e-1832.89Show/hide
Query:  LLRDVKNELEWDWFEEWVVLLWAIWFRRNE--MRQKKKGDGPVGG--------------------KTKSGCLQ------------VGAPEFDG-FKVNVD
        +LRD ++ L W  FEE VV LW++W RRN     +++  D  + G                    +  S   Q            +  P  +G FK+  D
Subjt:  LLRDVKNELEWDWFEEWVVLLWAIWFRRNE--MRQKKKGDGPVGG--------------------KTKSGCLQ------------VGAPEFDG-FKVNVD

Query:  AAFCLESGEAGVGV-VCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWL
        A+F      AG+GV + RD  GQV  +A+ + E++   D AE LAA  GLR+A+ET   P +LETDS+++  L   D E +S+ G ++E     +     
Subjt:  AAFCLESGEAGVGV-VCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWL

Query:  VGGSFTIREGNRVAHRLVRLAMEDR
        V  SFT R GN +AH L R A++ +
Subjt:  VGGSFTIREGNRVAHRLVRLAMEDR

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]2.3e-1834.73Show/hide
Query:  DIKFLLRDVKNELEWDWFEEWVVLLWAIWFRRNEMRQKKKGDGPVGG--KTKSGCLQV-----------------------GAPEFDGFKVNVDAAFCLE
        D+   +R   + + W      VVLLWAIW  RN+  Q     G +          LQV                         P     KVNVDAAF  E
Subjt:  DIKFLLRDVKNELEWDWFEEWVVLLWAIWFRRNEMRQKKKGDGPVGG--KTKSGCLQV-----------------------GAPEFDGFKVNVDAAFCLE

Query:  SGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPA-GWLVGGSFT
        S  AGVGV+ RDS G V  TA        D D+ EG A   G+ LAVE     F +ETDS+++  LL  D  + SE+G+L       + +    V  SFT
Subjt:  SGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPA-GWLVGGSFT

Query:  IREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED
         R GN  AH L +LA+     ++W+EE P  + S+LA D
Subjt:  IREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED

XP_030936170.1 uncharacterized protein LOC115961312 [Quercus lobata]1.5e-1726.43Show/hide
Query:  DARVRDLF-TASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSVGWGSRAST-------CFGIVNIRGEIMWSAGFGAILSRCKADDIKF
        D +V DL    S QW+  L++  F+ QEV  I+SIPL     ++ +IW +  S  +  ++ +       C  + ++   ++             ++ IK 
Subjt:  DARVRDLF-TASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSVGWGSRAST-------CFGIVNIRGEIMWSAGFGAILSRCKADDIKF

Query:  LLRDVKNELEWDWFEEWVVLLWAIWFRRNEMRQKKKGDGPVGGKTKSG----------------------CLQV--GAPEFDGFKVNVDAAFCLESGEAG
        +  + K+           ++LW +W+RRN+++   + D PV   + +                       C +V    P    FKVN D A   E  +AG
Subjt:  LLRDVKNELEWDWFEEWVVLLWAIWFRRNEMRQKKKGDGPVGGKTKSG----------------------CLQV--GAPEFDGFKVNVDAAFCLESGEAG

Query:  VGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGSFTIREGNR
        +GVV R+S GQ   + S        +D  E +AA+  +  A E     F+LE DS  V K L+ D +  S  G ++  A         +  S   R GN 
Subjt:  VGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGSFTIREGNR

Query:  VAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED
        VAH L + A   R   VWME+ P  + ++L+ D
Subjt:  VAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED

TrEMBL top hitse value%identityAlignment
A0A6J1C467 uncharacterized protein LOC1110077751.8e-2134.47Show/hide
Query:  NELEWDWFEEWVVLLWAIWFRRNEMR----------------------QKKKGDGPV--------GGKTKSGCLQVGAPEFDGFKVNVDAAFCLESGEAG
        + ++W   EE  V LWAIW  RN+                         +   +GP         GG+  + C     P    FKVNVDAAF   +  AG
Subjt:  NELEWDWFEEWVVLLWAIWFRRNEMR----------------------QKKKGDGPV--------GGKTKSGCLQVGAPEFDGFKVNVDAAFCLESGEAG

Query:  VGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGG--SFTIREG
        + ++ RDS   V  +A  F  ++ D   AE LAA  G+ LA+E    PF +ETDS QV  LL+ D E+ SE+G+L   ++R + +   +GG  SF  REG
Subjt:  VGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGG--SFTIREG

Query:  NRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED
        N  AH L R+ M      VW+EE  S +  ++A D
Subjt:  NRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED

A0A6J1CDQ4 uncharacterized protein LOC1110105332.4e-1832.89Show/hide
Query:  LLRDVKNELEWDWFEEWVVLLWAIWFRRNE--MRQKKKGDGPVGG--------------------KTKSGCLQ------------VGAPEFDG-FKVNVD
        +LRD ++ L W  FEE VV LW++W RRN     +++  D  + G                    +  S   Q            +  P  +G FK+  D
Subjt:  LLRDVKNELEWDWFEEWVVLLWAIWFRRNE--MRQKKKGDGPVGG--------------------KTKSGCLQ------------VGAPEFDG-FKVNVD

Query:  AAFCLESGEAGVGV-VCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWL
        A+F      AG+GV + RD  GQV  +A+ + E++   D AE LAA  GLR+A+ET   P +LETDS+++  L   D E +S+ G ++E     +     
Subjt:  AAFCLESGEAGVGV-VCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWL

Query:  VGGSFTIREGNRVAHRLVRLAMEDR
        V  SFT R GN +AH L R A++ +
Subjt:  VGGSFTIREGNRVAHRLVRLAMEDR

A0A6J1CIF1 uncharacterized protein LOC1110112373.5e-1732.11Show/hide
Query:  WFRRNEMRQKKKGDGPVGGK-TKSGCLQVGAPEFDGFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATR
        W  +  M  ++    P  G+ T +  +    P+   +K+N DA+F      AG+G++ R+  GQV  +A+ + ENI+  D AE + A  GL+LA +    
Subjt:  WFRRNEMRQKKKGDGPVGGK-TKSGCLQVGAPEFDGFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATR

Query:  PFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGSFTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAEDGVHE
        P +LETDS ++  L     E++SE G +V  A            +F  REGN+ AH L R A+  R   +WME+ P  + S L  + + E
Subjt:  PFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGSFTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAEDGVHE

A0A6J1DBJ7 uncharacterized protein LOC1110189731.1e-1834.73Show/hide
Query:  DIKFLLRDVKNELEWDWFEEWVVLLWAIWFRRNEMRQKKKGDGPVGG--KTKSGCLQV-----------------------GAPEFDGFKVNVDAAFCLE
        D+   +R   + + W      VVLLWAIW  RN+  Q     G +          LQV                         P     KVNVDAAF  E
Subjt:  DIKFLLRDVKNELEWDWFEEWVVLLWAIWFRRNEMRQKKKGDGPVGG--KTKSGCLQV-----------------------GAPEFDGFKVNVDAAFCLE

Query:  SGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPA-GWLVGGSFT
        S  AGVGV+ RDS G V  TA        D D+ EG A   G+ LAVE     F +ETDS+++  LL  D  + SE+G+L       + +    V  SFT
Subjt:  SGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPA-GWLVGGSFT

Query:  IREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED
         R GN  AH L +LA+     ++W+EE P  + S+LA D
Subjt:  IREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED

A0A803LNT0 Uncharacterized protein1.9e-1827.27Show/hide
Query:  ARVRDLFTASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSVGWGSR--------------ASTCFGIVNIRGEIMWSAGFGAILS----
        A V+DLF   G+W+  ++  +F + EV  I  IPL RF  ++V  W F K+  +  R              AS       +   ++W+A     +     
Subjt:  ARVRDLFTASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSVGWGSR--------------ASTCFGIVNIRGEIMWSAGFGAILS----

Query:  RCKADDIKFLLRDVKNELEWDWF--------EEWVVLLWAIWFRRNEMRQKKKGDGPVGGKTKSGCLQVGAPEFD---------------GFKVNVDAAF
        +   D I      +K  +  D             + L +++    +++    K  G VG   K+  L+V AP  D                +K+N DAA 
Subjt:  RCKADDIKFLLRDVKNELEWDWF--------EEWVVLLWAIWFRRNEMRQKKKGDGPVGGKTKSGCLQVGAPEFD---------------GFKVNVDAAF

Query:  CLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGS
        C      G+G V RD  G V            D   AE LAA  GL +++E    P +LE D +Q+ + L+    E S LG +V D +        +  S
Subjt:  CLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATRPFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGS

Query:  FTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED
         T R GN VAH+L  L+ E    RVW E  P C+   +A D
Subjt:  FTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTTACAGCCTGACGCTAGAGTTAGGGATTTGTTCACCGCATCAGGGCAATGGAATGAGGTTCTTATCCGACAACACTTTAGCCAGCAGGAGGTAAGATATATTCT
CTCCATTCCTCTACGTCGTTTTGCTTGTGATAATGTGGTCATTTGGCACTTCGAGAAGTCTGTAGGATGGGGGAGTCGAGCCTCCACTTGTTTTGGCATTGTAAACATAC
GAGGGGAGATTATGTGGTCTGCAGGTTTTGGGGCTATCTTGTCCAGGTGCAAGGCAGACGATATTAAGTTCCTCCTCCGAGATGTAAAGAATGAGCTGGAATGGGACTGG
TTTGAGGAGTGGGTGGTGTTATTATGGGCGATCTGGTTCAGGCGGAATGAAATGAGGCAGAAGAAGAAGGGGGATGGACCTGTTGGTGGGAAGACCAAATCGGGCTGTCT
GCAGGTGGGCGCGCCGGAGTTTGATGGGTTTAAGGTGAATGTTGATGCGGCCTTTTGTCTGGAGAGCGGAGAGGCGGGTGTAGGCGTGGTATGCCGTGATTCTTGGGGGC
AGGTGAGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGACTTTGCAGAAGGACTGGCGGCTTCCTTCGGTTTGAGGCTTGCGGTGGAGACGGCTACCAGA
CCTTTTGTGCTAGAGACAGATTCTATGCAGGTGTCCAAGCTTTTGCAGCATGATGTGGAGGAGGTGTCGGAGTTGGGGATGCTAGTGGAGGATGCGGTGAGGGGCGTTCC
AGCGGGGTGGTTGGTAGGCGGCAGCTTTACGATCAGGGAAGGCAATCGGGTTGCCCATCGTTTGGTAAGGTTGGCAATGGAGGACAGGTGTGACCGAGTATGGATGGAAG
AAGGCCCTTCATGTGTTTTGAGCTTGTTGGCTGAAGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGAAAGTCTTGAAGGCTCTGGTCTATTTTATGAGTTCTATAGA
CCTATTGTCACTCCCATAGGTGTCCTAGGTTTGAGAATGCACCCTCTTTTGTGCCATTTAGCTTCCAGGCGGGACCTTAGTGCCAGCCTAGAGTGCGAGGATGGGGGTTG
GCTTGAGGCGGGAGTTAAGGCAGGCGGGAGCAAAACTAGTTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGTTACAGCCTGACGCTAGAGTTAGGGATTTGTTCACCGCATCAGGGCAATGGAATGAGGTTCTTATCCGACAACACTTTAGCCAGCAGGAGGTAAGATATATTCT
CTCCATTCCTCTACGTCGTTTTGCTTGTGATAATGTGGTCATTTGGCACTTCGAGAAGTCTGTAGGATGGGGGAGTCGAGCCTCCACTTGTTTTGGCATTGTAAACATAC
GAGGGGAGATTATGTGGTCTGCAGGTTTTGGGGCTATCTTGTCCAGGTGCAAGGCAGACGATATTAAGTTCCTCCTCCGAGATGTAAAGAATGAGCTGGAATGGGACTGG
TTTGAGGAGTGGGTGGTGTTATTATGGGCGATCTGGTTCAGGCGGAATGAAATGAGGCAGAAGAAGAAGGGGGATGGACCTGTTGGTGGGAAGACCAAATCGGGCTGTCT
GCAGGTGGGCGCGCCGGAGTTTGATGGGTTTAAGGTGAATGTTGATGCGGCCTTTTGTCTGGAGAGCGGAGAGGCGGGTGTAGGCGTGGTATGCCGTGATTCTTGGGGGC
AGGTGAGCTTCACAGCTTCTGTTTTCCATGAGAATATTAGAGATGCGGACTTTGCAGAAGGACTGGCGGCTTCCTTCGGTTTGAGGCTTGCGGTGGAGACGGCTACCAGA
CCTTTTGTGCTAGAGACAGATTCTATGCAGGTGTCCAAGCTTTTGCAGCATGATGTGGAGGAGGTGTCGGAGTTGGGGATGCTAGTGGAGGATGCGGTGAGGGGCGTTCC
AGCGGGGTGGTTGGTAGGCGGCAGCTTTACGATCAGGGAAGGCAATCGGGTTGCCCATCGTTTGGTAAGGTTGGCAATGGAGGACAGGTGTGACCGAGTATGGATGGAAG
AAGGCCCTTCATGTGTTTTGAGCTTGTTGGCTGAAGATGGAGTGCATGAGTTTCCTCAGGCGAGGCAGGAAAGTCTTGAAGGCTCTGGTCTATTTTATGAGTTCTATAGA
CCTATTGTCACTCCCATAGGTGTCCTAGGTTTGAGAATGCACCCTCTTTTGTGCCATTTAGCTTCCAGGCGGGACCTTAGTGCCAGCCTAGAGTGCGAGGATGGGGGTTG
GCTTGAGGCGGGAGTTAAGGCAGGCGGGAGCAAAACTAGTTGCTAG
Protein sequenceShow/hide protein sequence
MTLQPDARVRDLFTASGQWNEVLIRQHFSQQEVRYILSIPLRRFACDNVVIWHFEKSVGWGSRASTCFGIVNIRGEIMWSAGFGAILSRCKADDIKFLLRDVKNELEWDW
FEEWVVLLWAIWFRRNEMRQKKKGDGPVGGKTKSGCLQVGAPEFDGFKVNVDAAFCLESGEAGVGVVCRDSWGQVSFTASVFHENIRDADFAEGLAASFGLRLAVETATR
PFVLETDSMQVSKLLQHDVEEVSELGMLVEDAVRGVPAGWLVGGSFTIREGNRVAHRLVRLAMEDRCDRVWMEEGPSCVLSLLAEDGVHEFPQARQESLEGSGLFYEFYR
PIVTPIGVLGLRMHPLLCHLASRRDLSASLECEDGGWLEAGVKAGGSKTSC