CuGenDBv2

Gene ID	Spg008206
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	scaffold2:18846351..18856815
RNA-Seq Expression	Spg008206
Synteny	Spg008206
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

3.3e-24

83.78

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Query:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL
        +GPIT+ KAKKIQEAFTLHVQKL NA +E KNFE KFLYNVSSASQEE+GVKMAREKLC+ EDGTG+EKSVQNL
Subjt:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL

KAA0059666.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

9.6e-24

83.78

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Query:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL
        +GPIT+ KAKKIQEAFTLHVQKL NA +E KNFE KFLYNVSSASQEE+ VKMAREKLC+LEDGTG+EKSVQNL
Subjt:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]

1.5e-24

85.14

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Query:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL
        +GPIT+ KAKKIQEAFTLHVQKL NA +E KNFEPKFLYNVSSASQEE+ +KMA EKLCSLEDGTGDEKSVQNL
Subjt:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

9.6e-24

83.78

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Query:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL
        +GPIT+ KAKKIQEAFTLHVQKL NA +E KNFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT +EKSVQNL
Subjt:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]

9.6e-24

83.78

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Query:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL
        +GPIT+ KAKKIQEAFTLHVQKL NA +E KNFE KFLYNVSSASQEE+ VKMAREKLC+LEDGTG+EKSVQNL
Subjt:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein

1.6e-24

83.78

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Query:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL
        +GPIT+ KAKKIQEAFTLHVQKL NA +E KNFE KFLYNVSSASQEE+GVKMAREKLC+ EDGTG+EKSVQNL
Subjt:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL

A0A5A7UZP1 Transposon Ty3-I Gag-Pol polyprotein

4.6e-24

83.78

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Query:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL
        +GPIT+ KAKKIQEAFTLHVQKL NA +E KNFE KFLYNVSSASQEE+ VKMAREKLC+LEDGTG+EKSVQNL
Subjt:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein

7.1e-25

85.14

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Query:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL
        +GPIT+ KAKKIQEAFTLHVQKL NA +E KNFEPKFLYNVSSASQEE+ +KMA EKLCSLEDGTGDEKSVQNL
Subjt:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL

A0A5D3BWE8 F15O4.13

4.6e-24

83.78

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Query:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL
        +GPIT+ KAKKIQEAFTLHVQKL NA +E KNFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT +EKSVQNL
Subjt:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL

A0A5D3DRJ1 F15O4.13

4.6e-24

83.78

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Query:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL
        +GPIT+ KAKKIQEAFTLHVQKL NA +E KNFE KFLYNVSSASQEE+ VKMAREKLC+LEDGTG+EKSVQNL
Subjt:  KGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G23110.1 Zinc finger, C3HC4 type (RING finger) family protein

1.6e-08

64.44

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Query:  RFWPI-TMRYLQKRIRSFVATASKEYDIHLLPWASLAVCTSDDSS
        RF+ + TM     +I  F ATASKEYDIHLLPWAS+A C SDDSS
Subjt:  RFWPI-TMRYLQKRIRSFVATASKEYDIHLLPWASLAVCTSDDSS

Sequences

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CDS sequence

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ATGGCCGCGAGTCGCTGTTGTCGGAGTCACTGGCACCGTTTCAAGGGCCTGCGCTTTTGGCCTATAACAATGCGGTATTTACAGAAGAGGATCAGGTCTTTTGTTGCTAC
TGCATCAAAAGAATATGACATTCACTTGCTACCTTGGGCATCGCTTGCTGTTTGCACATCTGACGACTCCTCAAATGTCCCCAACAGAGTGTACGCACCCTTGGGAAGAA
ATCGATTCCTGTGGAGAGACGTATTTTCTCAACCTCCCCAAGGCCATGAGTTTATCTCAACTCATCTGGCTTGGGCCCATACACTTCATCTGAGTCTAGCTCACCCGGCC
GAGGCCGAGGCCAAGCACCCTTTACTAAGGTCGAGCACAAACTTTAAAGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACATTGCATGTTCAAAA
GCTAACAAATGCACATCAAGAGGCAAAGAATTTTGAACCAAAATTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGT
GTAGTTTGGAAGATGGCACGGGGGACGAAAAAAGTGTGCAGAATTTGTTTGATGTTCAACCGATTCATTGGATTAGTTTTGATCAATCTAATTCTGGAATTGAAGGATTG
GCATTCCGTAATTCCGTAAAGCGGAAGCGTGATTGGGACCGATTCTGTGAACACCACCACTATGGCTACACCGATATGACTCTGAGACTTCTAGAGGTAGGAGACTGGTG
GGAGTCCAGAGGAAGCCTTGAGGGGAATTCTCTGAGACCCCCATTCGGTCTTGCCCCTGAAATGGATACCCCCACCCGCATATCTCCTACATGGATGCTTTGGATCATTG
CATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAGGATAAGGCCCGAAAATAGGACAGCGTCGCGACGCTGTGACGTCACTCAACTTGCTGGCCAAGAA
ATGGGACAGCGTCTCGACGTTATGCGGATTTCAGACCAGGCTGGCGCGGATTGGGCTTGA

mRNA sequence

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Protein sequence

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MAASRCCRSHWHRFKGLRFWPITMRYLQKRIRSFVATASKEYDIHLLPWASLAVCTSDDSSNVPNRVYAPLGRNRFLWRDVFSQPPQGHEFISTHLAWAHTLHLSLAHPA
EAEAKHPLLRSSTNFKGPITRSKAKKIQEAFTLHVQKLTNAHQEAKNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTGDEKSVQNLFDVQPIHWISFDQSNSGIEGL
AFRNSVKRKRDWDRFCEHHHYGYTDMTLRLLEVGDWWESRGSLEGNSLRPPFGLAPEMDTPTRISPTWMLWIIASVSNTRWAVSHSVTRIRPENRTASRRCDVTQLAGQE
MGQRLDVMRISDQAGADWA

Spg008206 (gene) of Sponge gourd (cylindrica) v1 genome